Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0531
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.64 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -2

Query: 313 VSRRTMLENCTSALFPPQSPPTSLFKDIFYIPDYLFT--MNDLSHVRSIRTKVNARSMLT 140
           +SRR +LE       PP  P      D+F  PD +F+  +    + + +  K+     L 
Sbjct: 32  ISRRHLLELAEKIPGPPALPLIGNALDLFGSPDAMFSQVLKKAENFKDV-VKIWVGPKLV 90

Query: 139 ISKYQHRFLLSLLSPAIYV 83
           I     R +  +LS  +Y+
Sbjct: 91  ICLIDPRDVEIILSSNVYI 109


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 435 TTVTNCIQSPSTSLQSNLNCIA 500
           TT+T+C++S     +SN+  I+
Sbjct: 169 TTLTDCLRSELAQCESNIKVIS 190


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +3

Query: 495 IARPSTSYMPVPS--MPRTIPFMMHQTRIGHSQSLSMVPKTLV 617
           +A  +  YM   S    R + F   + +IGH    +  P TLV
Sbjct: 171 VAEETVDYMLEKSGNFSRLVVFFRFERQIGHHLIQTFAPSTLV 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,143
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)