Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0531
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 31 0.68
At3g13890.1 68416.m01755 myb family transcription factor (MYB26)... 30 1.6
At5g05260.1 68418.m00564 cytochrome P450 79A2 (CYP79A2) identica... 29 2.1
At3g52400.1 68416.m05763 syntaxin, putative (SYP122) similar to ... 29 2.1
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 29 2.1
At5g35917.1 68418.m04317 cytochrome P450, putative similar to Cy... 29 2.8
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 29 3.6
At4g35890.1 68417.m05097 La domain-containing protein contains P... 28 6.4
At5g37290.1 68418.m04479 armadillo/beta-catenin repeat family pr... 27 8.4
At3g32130.1 68416.m04091 hypothetical protein 27 8.4
At3g04550.1 68416.m00483 expressed protein 27 8.4
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/89 (23%), Positives = 43/89 (48%)
Frame = +3
Query: 330 RSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPS 509
R+ +RY F S+++ + N N L N N+++ + S L + A P+
Sbjct: 18 RNNQERYSSTFYSKSRKLLIGVNQNQALLNTNTDNSSLYS-RSSIFRGLSAEAVEAADPA 76
Query: 510 TSYMPVPSMPRTIPFMMHQTRIGHSQSLS 596
T+ + V + RT P + ++ RI + + ++
Sbjct: 77 TTRVTVSDVNRTGPLVEYERRISNGELMT 105
>At3g13890.1 68416.m01755 myb family transcription factor (MYB26)
similar to myb-related transcription factor GI:1167486
from [Lycopersicon esculentum]; contains myb DNA binding
domain: PF0049
Length = 367
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARP---STSYMPVPSMPRTIPFMMHQ 566
+M +LL NLP HN + S+ SN+ P + S++ +PS P M
Sbjct: 140 SMASLLTNLPYHNGFNPTTVDDESSRFMSNIITNTNPNFITPSHLSLPSPHVMTPLMFPT 199
Query: 567 TRIGHSQSLS 596
+R G + L+
Sbjct: 200 SREGDFKFLT 209
>At5g05260.1 68418.m00564 cytochrome P450 79A2 (CYP79A2) identical
to SP|Q9FLC8 Cytochrome P450 79A2 (EC 1.-.-.-)
{Arabidopsis thaliana}
Length = 523
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 366 SQNQNIPQSFNMNALLGNLPQ---HNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSM 536
++N ++P L+GNLP+ N V I S L +++ CI +T +PV S
Sbjct: 29 TRNLSLPPGPKSWPLIGNLPEILGRNKPVFRWIHSLMKELNTDIACIRLANTHVIPVTS- 87
Query: 537 PR 542
PR
Sbjct: 88 PR 89
>At3g52400.1 68416.m05763 syntaxin, putative (SYP122) similar to
SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
protein At-Syr1) {Arabidopsis thaliana}
Length = 341
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/101 (26%), Positives = 42/101 (41%)
Frame = +3
Query: 228 KMSLNKLVGGDCGGNNALVQFSNIVRRDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNA 407
+MS K+ GG C G N L F V L+ E DR S N+ N NA
Sbjct: 26 EMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLK---ELDRLCHNLRSSNEQSKTLHNANA 82
Query: 408 LLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVP 530
+ + + VT +++ + L+ NL + R + +P
Sbjct: 83 VKELKKKMDADVTAALKT-ARRLKGNLEALDRANEVNRSLP 122
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +3
Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTIPFMMHQTRI 575
NM+A NLP T++T ++ Q++ S + P S P P + TR
Sbjct: 449 NMHASPENLPSVITSITQSSSGSTSPNQTSHMATPDSSPTTKPSNSSPTRKPSVSSPTRE 508
Query: 576 GHSQSLSMVPK 608
S SM PK
Sbjct: 509 PSDSSHSMAPK 519
>At5g35917.1 68418.m04317 cytochrome P450, putative similar to
Cytochrome P450 79A2 (SP:Q9FLC8) {Arabidopsis thaliana}
Length = 490
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 366 SQNQNIPQSFNMNALLGNLPQ---HNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSM 536
++N ++P L+GNLP+ N V I S L +++ CI +T +PV S
Sbjct: 37 TRNLSLPPGPKSWPLVGNLPEILGRNKPVFRWIHSLMEELNTDIACIRLANTHVIPVTS- 95
Query: 537 PR 542
PR
Sbjct: 96 PR 97
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 28.7 bits (61), Expect = 3.6
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = +3
Query: 324 QHRSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIAR 503
Q + + + Q+ +SQN N QS AL+ P + S STS S I +
Sbjct: 602 QQQQQQQQQQQQTVSQNTNSDQSSRQVALMQGNPSNGVNYAFNAASASTSTSSIAGLIHQ 661
Query: 504 PSTS--YMPVPSMPRTIPFMMHQTRI-GHSQSLSMVPKTLVQNYGAMT 638
S + P P+ + ++ S S +MVP + Q + T
Sbjct: 662 NSMKGRHQNAAYNPPNSPYGGNSVQMQSPSSSGTMVPSSSQQQHNLPT 709
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 27.9 bits (59), Expect = 6.4
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +3
Query: 306 RDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSN 485
R+ H+S R QE +QN +SFN GN T ++ PS ++Q
Sbjct: 264 RNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGRE--GNAQSQRGTPA-FVRHPSPTVQPI 320
Query: 486 LNCI-ARPSTSYMPVP---SMPRTIPFMMHQTRIGH 581
+ A+P S++P P + P M + T I H
Sbjct: 321 PQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPH 356
>At5g37290.1 68418.m04479 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 180
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 288 FSNIVRRDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQHNTTVTN-CIQSP 464
F+N R++ + +H + +Y+QE +SQ QN ++ NL N I
Sbjct: 2 FTNNQRQEERTGKHGTPRLQYLQELVSQFQNATDEETKERIVANLANFAYDPYNYTILRQ 61
Query: 465 STSLQSNLNCIARPS 509
L+ ++CI P+
Sbjct: 62 LNVLELFVDCITEPN 76
>At3g32130.1 68416.m04091 hypothetical protein
Length = 214
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 224 IKNVFKQTCWW*LW--WKQCTCTIFQHSASRYRQ 319
I ++ +Q W LW WK +++QH +S +R+
Sbjct: 34 IPDIDRQLPIWMLWRIWKSRNLSVYQHKSSTWRE 67
>At3g04550.1 68416.m00483 expressed protein
Length = 449
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 438 TVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSMVPK 608
++ + I SP T ++ P T PV +PRT+ F + + I S +M+PK
Sbjct: 3 SLKSLISSPFTQSTTH-GLFTNPITR--PVNPLPRTVSFTVTASMIPKRSSANMIPK 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,751
Number of Sequences: 28952
Number of extensions: 276840
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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