Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0530
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.36 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   1.9  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   3.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    26   5.9  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   5.9  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    26   5.9  

>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +2

Query: 461 SLTNAQKFVNSYIPNRRTVQPIQAEPT---QNYFTPAQFLSSQSLPGVGLRYFVPLSLNE 631
           + TN+QK+  + +PN  T QP+ A+P+   ++ + P     S S P     +   L    
Sbjct: 124 NFTNSQKYFANDLPNSLTDQPL-AQPSASQRSTWLPCSAAVSTSSPSSDPFFDSYLEQAF 182

Query: 632 QKIEKSKQDDSKLNRIE 682
           +K E+   +  K++++E
Sbjct: 183 EKAERLANEQQKISKVE 199


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 377 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQAEP 538
           N Q +PQP   Q +        P AP +S +N +  +N  IPN +   P QA+P
Sbjct: 732 NQQQQPQPQSQQQQQAS---QFPQAPSVS-SNVRP-INGSIPNAQPSVPGQAQP 780


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 368 PDPNAQWRPQPFKSQP 415
           PDPNA  RP   +SQP
Sbjct: 169 PDPNAMQRPHDLESQP 184


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 445 NCSSSIFNQC--SKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPT 588
           N  +S+F+    S++   LH K  NSS++T    P+L  TS    F+KPT
Sbjct: 2   NSEASVFSNMDWSQLAHSLHKKANNSSSSTTGAFPQL--TS----FTKPT 45


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 587 PGVGLRYFVPLS-LNEQK---IEKSKQDDSKLNRIETDQV 694
           PG  + + VP S + + K   +E  K+D+S L R+E  Q+
Sbjct: 423 PGTAMSFVVPKSEVGKHKPTSLESCKKDESVLRRLEKKQI 462


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 492 PTYQTDEQFSQYRQNPPKTI 551
           P Y+ +E F  ++QNPP  +
Sbjct: 157 PFYEHEEDFINFKQNPPSGV 176


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 494 YIPNRRTVQPIQAEPTQNYFTPAQFLSSQSLPGVGLRYFVPLSLNEQKIEKSKQDD 661
           Y+  R+ +   +  P   Y+   + +S    P +GLR   P+SL  Q +     D+
Sbjct: 395 YVNTRKMILSSEGNP---YYLKGKVISGIGGPHIGLRNVWPMSLIVQALTSDDDDE 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,462
Number of Sequences: 5004
Number of extensions: 55030
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)