Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0530
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0216 + 15286968-15286970,15287068-15287213,15288333-152883... 31 0.66
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 29 2.7
05_03_0458 + 14280953-14281866,14281964-14282912 29 3.5
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435 29 3.5
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755... 28 6.2
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 28 8.1
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 28 8.1
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191 28 8.1
>07_03_0216 +
15286968-15286970,15287068-15287213,15288333-15288335,
15288514-15288697,15289772-15289824,15290118-15290206,
15291270-15291506,15293494-15293687,15293774-15293834,
15293905-15294022,15294093-15294174,15295212-15295337,
15295435-15295530,15295945-15296099,15296706-15296802,
15296926-15297003,15297085-15297192
Length = 609
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 122 HRSRQSYDNQIHSVVFLNTVNH*HRLA-DVSSHGALVPN 9
HR ++ Y N I + LNT+ LA + S HGAL N
Sbjct: 416 HRFKRGYKNVIDEAIRLNTIGEESHLAMETSGHGALKEN 454
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 499 TKPTNSSANTGRTHPKLFHTSPILKFSKPTR 591
T P SS ++ R + + FH+ P++ +KP++
Sbjct: 504 THPAESSQDSQRVYTRTFHSGPLVNQNKPSK 534
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +2
Query: 356 SNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSY--IPNRRTVQPIQ 529
S+ P P Q P P P T + PT PP +S +P R+ +
Sbjct: 63 SSPPPLPPLQPTPPPL---PPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSK 119
Query: 530 AEPTQNYFTPAQFLSSQSLPGVGLRYFVPLS 622
+ TP +FLSS S P R+ P++
Sbjct: 120 CSAPTSAQTPTRFLSSSSPPPDAPRHLSPVA 150
>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
Length = 415
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 398 PFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRR 511
P + P + +++ T+ PLSLT A V++ IP+RR
Sbjct: 7 PATAAPAASPALFSASTSRPLSLTAAAAAVSARIPSRR 44
>11_06_0734 -
26774471-26774652,26775008-26775137,26775447-26775596,
26775685-26775918,26775990-26776161,26776285-26776506,
26776604-26776770,26776880-26777018,26777342-26777693,
26778175-26778370
Length = 647
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 439 VVYDMRVSRLRFEGLGSPLSVGVWCVIRPF 350
++ D R + EGL PLS + C+ PF
Sbjct: 599 ILRDWRFGHYKMEGLQDPLSCFIRCIFAPF 628
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 356 SNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 523
+ D P P QWRP F QP + ++ P L Q V S +P R+ P
Sbjct: 110 AGDKPLPQQQWRPTKFGDQPPQPSLGWSPNLNLPYPLPPTQPTVVS-LPAPRSGGP 164
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 500 PNRR-TVQPIQAEPTQNYFTPAQFLSS---QSLPGVGLRYFVPLSLNEQKIEKSKQDDSK 667
P++R T + + +P + F+S + LPG+G RY +E + + K D +
Sbjct: 284 PSKRPTAKKLLKQPFFKQARSSDFISRKLLEGLPGLGARYLALKEKDEVLLSQKKMPDGQ 343
Query: 668 LNRIETDQ 691
I D+
Sbjct: 344 KEEISQDE 351
>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
Length = 539
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 77 KRPSEFDYRNFDVTCE-RNKGLK 142
K P E YR F VTC+ RN LK
Sbjct: 305 KHPPECGYRTFQVTCDHRNASLK 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,168
Number of Sequences: 37544
Number of extensions: 355105
Number of successful extensions: 995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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