Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0530
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                31   0.67 
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_24067| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)                      29   3.6  
SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)                  29   4.8  
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                28   8.3  

>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 412

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +2

Query: 368 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQAEPTQN 547
           P P   ++P PF       H++Y  PTAPP ++  A+    + +   R   P +A     
Sbjct: 179 PPPLNPYQPPPFPPP----HLMYPQPTAPPAAIPRAK----AKVQTPRKGAPQRATARNG 230

Query: 548 YFTPAQFLSSQSLPGVG 598
           Y  P  F S    P +G
Sbjct: 231 YGAPMGFGSPIQQPMIG 247


>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 CSSSIFNQCSKIR--QLLHTKPT--NSSANTGRTHPKLFHTSPILKFSKP 585
           CS+++   CS +    L HT+PT  ++    G T P L HT P+L  ++P
Sbjct: 49  CSATLA-PCSALTCPMLGHTRPTLGHTRPTLGHTRPTLGHTRPMLGHTRP 97



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 496 HTKPT--NSSANTGRTHPKLFHTSPILKFSKP 585
           HT+PT  ++    G T P L HT P+L  + P
Sbjct: 73  HTRPTLGHTRPTLGHTRPMLGHTRPMLGHTHP 104


>SB_24067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +2

Query: 404 KSQPRYTHIVYNVPTAPPLSLTNAQKFVNS-YIPNRRTVQPIQAEPTQN--YFTPAQFLS 574
           +++ R + + YN    PP S  NA+  V+S +  NR    P+     QN  Y      L 
Sbjct: 149 ENRARTSPLAYNKQQIPPYSRHNARLIVHSRHGENRVRTSPLSYNKQQNPPYSRHKARLI 208

Query: 575 SQSLPGVGLRYFVPLSLNEQKI 640
             S  G       PLS N+Q+I
Sbjct: 209 VHSRHGENRARTPPLSYNKQQI 230


>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
          Length = 841

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 457 SIFNQCSKIRQLLHTKPTNSSANTGRT-HPKLFHTSPILK 573
           ++  Q  KI Q LH      +   G   H KLFH  P++K
Sbjct: 559 NVKEQVRKINQYLHFNDAEKAKPRGHEEHDKLFHVRPLIK 598


>SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)
          Length = 485

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 466 NQCSKIRQLLHTKPTNSSANTGRT-HPKLFHTSPILK 573
           N+  KI Q LH      +   G   H KLFH  P++K
Sbjct: 362 NKYVKINQYLHFNDAEKAKPRGHEEHDKLFHVRPLIK 398


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 371  DPNAQWRPQPFKSQPRYTHIVYNVPTAPPL--SLTNAQKFVNSYIPNRRTVQPIQAEP 538
            DPN+QW+P   K +P+      N P +  L  S  ++   +N+  P+     P   +P
Sbjct: 984  DPNSQWKPVTVKQEPK-DEDCQNPPVSKKLRPSPPDSLPIMNAGTPSSGHFSPHSGQP 1040


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,271
Number of Sequences: 59808
Number of extensions: 411304
Number of successful extensions: 1148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)