Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0530
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 31 0.60
DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagella... 31 0.60
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 31 0.60
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 30 1.8
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 30 1.8
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical pr... 29 4.2
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 29 4.2
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 29 4.2
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 4.2
U23524-3|AAC46823.2| 257|Caenorhabditis elegans Mirp k channel ... 29 4.2
U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel ... 29 4.2
AF541978-1|AAO65851.1| 256|Caenorhabditis elegans MPS-1 protein. 29 4.2
U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC006750-2|AAO38570.1| 478|Caenorhabditis elegans Hypothetical ... 28 7.3
AC006750-1|AAF60535.1| 527|Caenorhabditis elegans Hypothetical ... 28 7.3
Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical
protein F46F6.4c protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 344 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 523
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 62
Query: 524 IQAEPTQNYFTPAQFLSSQS 583
I ++P QN A L S
Sbjct: 63 I-SDPLQNLIRRASRLEDDS 81
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 344 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 523
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 158 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 213
Query: 524 IQAEPTQNYFTPAQFLSSQS 583
I ++P QN A L S
Sbjct: 214 I-SDPLQNLIRRASRLEDDS 232
>DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagellar
transport proteinvariant b protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 344 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 523
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 62
Query: 524 IQAEPTQNYFTPAQFLSSQS 583
I ++P QN A L S
Sbjct: 63 I-SDPLQNLIRRASRLEDDS 81
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 344 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 523
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 161 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 216
Query: 524 IQAEPTQNYFTPAQFLSSQS 583
I ++P QN A L S
Sbjct: 217 I-SDPLQNLIRRASRLEDDS 235
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 344 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 457
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 344 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 457
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 50 CASDLLCSRKRPSEFDYRNFDVTCERNKGLKRMRK 154
CA L+ S FD+RNF V C R L +M K
Sbjct: 1246 CAQLLIGYFDYYSRFDFRNFVVQCRREMILSKMEK 1280
>Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical
protein B0393.2 protein.
Length = 585
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PGVGLRYFVPLSLNEQKIEKSKQDDSKLNRI 679
PGV +F+PLS + + K K D L R+
Sbjct: 4 PGVSANFFIPLSFDATSLIKYKLSDDLLARV 34
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 365 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQK 481
AP P QW P +Q + + + P APP TN Q+
Sbjct: 36 APAPQHQWNP---ATQQQNNYYYHQQPAAPPQQHTNPQQ 71
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 365 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQK 481
AP P QW P +Q + + + P APP TN Q+
Sbjct: 36 APAPQHQWNP---ATQQQNNYYYHQQPAAPPQQHTNPQQ 71
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 365 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQK 481
AP P QW P +Q + + + P APP TN Q+
Sbjct: 36 APAPQHQWNP---ATQQQNNYYYHQQPAAPPQQHTNPQQ 71
>U23524-3|AAC46823.2| 257|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform a protein.
Length = 257
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 377 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNR 508
+++W+P P ++PR + + V + P + +A ++S PNR
Sbjct: 125 DSEWKPLPNGTRPRGHYSISTVTSDIPEIVVSADDCIHSDFPNR 168
>U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform b protein.
Length = 303
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 377 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNR 508
+++W+P P ++PR + + V + P + +A ++S PNR
Sbjct: 125 DSEWKPLPNGTRPRGHYSISTVTSDIPEIVVSADDCIHSDFPNR 168
>AF541978-1|AAO65851.1| 256|Caenorhabditis elegans MPS-1 protein.
Length = 256
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 377 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNR 508
+++W+P P ++PR + + V + P + +A ++S PNR
Sbjct: 125 DSEWKPLPNGTRPRGHYSISTVTSDIPEIVVSADDCIHSDFPNR 168
>U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical
protein T14E8.4 protein.
Length = 475
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 371 DPNAQWRPQPFKSQ---PRYTHIVYNVPTAPPLSLTNAQ--KFVNSYIPNRRTVQ 520
DPN++++P+P SQ P ++ + AP T+ Q K V+ ++PN T +
Sbjct: 240 DPNSKFKPRPTTSQSNGPVIKTVIVDERGAPMNQPTSTQKPKVVHKFLPNPYTTK 294
>Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical
protein F32H2.4 protein.
Length = 298
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 187 DYEVTVADVPDGVRVQCTRHHGEVRHEGW 273
D+ + +A VPDG R +H GE W
Sbjct: 239 DHSIDIAYVPDGSRCHEIKHTGETYSVAW 267
>AC006750-2|AAO38570.1| 478|Caenorhabditis elegans Hypothetical
protein Y39F10B.1b protein.
Length = 478
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 437 NVPTAPPLSLTNAQK-FVNSYIPNRRTVQPIQAEPTQNYFTP 559
N P+ PP S ++ Q F +S P QP+ A Q+ TP
Sbjct: 262 NGPSRPPSSFSSNQNPFADSISPEAPQAQPVAAARRQSTTTP 303
>AC006750-1|AAF60535.1| 527|Caenorhabditis elegans Hypothetical
protein Y39F10B.1a protein.
Length = 527
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 437 NVPTAPPLSLTNAQK-FVNSYIPNRRTVQPIQAEPTQNYFTP 559
N P+ PP S ++ Q F +S P QP+ A Q+ TP
Sbjct: 311 NGPSRPPSSFSSNQNPFADSISPEAPQAQPVAAARRQSTTTP 352
>Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical
protein R13.4 protein.
Length = 803
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +2
Query: 368 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQAEPTQN 547
P +Q P Q +Y H++ P + + NAQ++ + PN E Q
Sbjct: 271 PSGPSQMAGHPHMQQMQYGHMMRAPPVSVYGQMNNAQQYAVTAHPNPVPQPYYHPEVRQL 330
Query: 548 YFTPAQFLSSQSLPGVG 598
Y T A ++ + L G
Sbjct: 331 YETTAGYIVDRELLAEG 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,933
Number of Sequences: 27780
Number of extensions: 314099
Number of successful extensions: 1030
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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