Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0530
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60380.1 68416.m06753 expressed protein                             33   0.14 
At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family...    31   0.73 
At1g15780.1 68414.m01893 expressed protein                             29   2.2  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    29   3.9  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    29   3.9  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    28   5.1  
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    28   6.8  
At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At3g51240.1 68416.m05609 naringenin 3-dioxygenase / flavanone 3-...    27   9.0  

>At3g60380.1 68416.m06753 expressed protein 
          Length = 743

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 392 PQPFKSQPRYTHIVYNVPTA-PPLSLTNAQKFVNSYIPNRRTVQPIQAEPTQNYFTPAQF 568
           P P++++P    I  N P+   P+S+    K ++S      + Q   A   QN F+P++ 
Sbjct: 254 PVPWQARPEMMGIGDNYPSNFQPISVDETLKSISSRSTGSSSSQTSYASQNQNRFSPSRS 313

Query: 569 LSSQSL 586
           +S++SL
Sbjct: 314 VSAESL 319


>At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family
           protein
          Length = 575

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 418 IHAYRIQRSNCSSSIFNQCSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPT 588
           IH +         S F Q + +    H KP +++ N   T+P L HTSP++  S P+
Sbjct: 407 IHQFLSPNGIPQQSYFPQGAALTAPSHAKPVDNTENPPTTNPYL-HTSPMVASSIPS 462


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
 Frame = +2

Query: 389 RPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQ-AEPTQNYFTPAQ 565
           RP    SQ +    +Y       L     Q F +  +PN  ++ P    +  QN   P Q
Sbjct: 213 RPHAMSSQQQQQPYLYQQQLQQQLL---KQNFQSGNVPNPNSLLPSHIQQQQQNVLQPNQ 269

Query: 566 FLSSQSLPGVGLRYFVPLSLNE---QKIEKSKQDDSKLNRIETDQ 691
             SSQ  PGV      P ++N    Q +  ++Q   +L+  +T Q
Sbjct: 270 LHSSQQ-PGVPTSATQPSTVNSAPLQGLHTNQQSSPQLSSQQTTQ 313


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 451 SSSIFNQCSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTR 591
           S  I+N C + R +LH K     AN  +    +FHT P   +S+P R
Sbjct: 407 SDPIYN-CEECRFILHEK----CANHPKKKRHVFHTKPFTLWSRPPR 448


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 533 EPTQNYFTPA-QFLSSQSLPGVGLRYFVPLSLNEQKIEKSKQDDSKLNRIETDQ 691
           +P +N+ +P  QFL  +  P +  R+     L E  I +S  DD++L+  E+++
Sbjct: 207 DPKKNFLSPRPQFLHYKPNPRIEKRFDECKQLEELFISESSSDDTELSVEESEE 260


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 356 SNDAPDPNAQWRPQP-FKSQPRYTHIVYNVPTAPPLSL 466
           S+ +P P    +PQP  ++QP  TH V   PT PPL L
Sbjct: 172 SSSSPFPVFS-QPQPQTQTQPPQTHNVSFTPTPPPLPL 208


>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 445 NCSSSIFNQCSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFCS 615
           N  SS  N   K+R++  TK +NSS+ + +     F +    K   P  CW E++C+
Sbjct: 365 NQQSSQVNNTKKVREI--TKISNSSSVSDQVISTAFGSK---KVDSPL-CWLEVYCN 415


>At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 379

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  DLLCSRKRPSEFDYRNF-DVTCERNKGLKRM 148
           DLL  R  PSEFDY +  +  C  NK ++ M
Sbjct: 205 DLLNKRVLPSEFDYGSLVEKLCGENKAVRAM 235


>At3g51240.1 68416.m05609 naringenin 3-dioxygenase / flavanone
           3-hydroxylase (F3H) identical to GI:3790548
          Length = 358

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 476 EHWLKIEEEQLERCIRYACIEVEI*RAGVSIERWGL 369
           E W+K+ EE  ER +  AC  +E+    + +E+  L
Sbjct: 151 EGWVKVTEEYSERLMSLACKLLEVLSEAMGLEKESL 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,996
Number of Sequences: 28952
Number of extensions: 289202
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)