Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0529
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 513  PT*SAGTRTWTASSSENRPKESTQLWNMNPFPAWWSV*RSSPQRNPSVSRNSLSTTP 683
            P  + G  T  +S+    P      W   P   WWS   +SP    + +R + +T P
Sbjct: 1015 PQVTTGVDTGASSTEHMHPD-----WTTKP-STWWSSTTTSPWWTTTTTRRTTTTRP 1065


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 513 PT*SAGTRTWTASSSENRPKESTQLWNMNPFPAWWSV*RSSPQRNPSV 656
           P+   GT  +T+S  +    + + + ++ P+P    +   + Q  PS+
Sbjct: 458 PSTELGTNIYTSSKRQRTSPQLSPMSSLPPYPNRTQITEVTQQTEPSI 505


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 334 IHFRKEKGFKVHWNAGRLENFLYSVDKLRTYTVPR 230
           +  +KE G+KV W+  +    +Y  D+   +  P+
Sbjct: 303 VELQKEGGWKVVWDDTQKNTHMYKGDQWVAFDSPK 337


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,656
Number of Sequences: 336
Number of extensions: 4005
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)