Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0529
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179           31   0.86 
05_04_0259 + 19494629-19495394,19495408-19495949                       30   2.0  
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368...    29   2.6  
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244...    28   8.0  
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509...    28   8.0  

>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
          Length = 312

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 629 SSNTPPRRERIHVPKLSTLLRSVL***C-SPRPGACTSRWAMTSRAPR*RKDPGHYGASC 453
           S + PP R   HVP  STLL       C +PRP +C   +A      +    P   G   
Sbjct: 9   SPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCFHSYAAGEGYEQLDPMPETAGVEV 68

Query: 452 LGSVARQCERSQEW 411
            G +A   E ++ +
Sbjct: 69  FGLIAAFMEAAENF 82


>05_04_0259 + 19494629-19495394,19495408-19495949
          Length = 435

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 83  FRAVMQGSQHVGKGVHTSSVTTE-KNVCYAPFGALQPRATKEGRIKCTLIPGDGVGPE 253
           +   M GS   G  V T  +  + K V +  FGA    ATK+G + C  +   GV PE
Sbjct: 336 YDGTMVGSTRAGPAVPTVELVLQSKAVSWVVFGANSMVATKDGAL-CFGVVDGGVAPE 392


>02_01_0507 -
           3682383-3682703,3682830-3682970,3683071-3683147,
           3683835-3683901
          Length = 201

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 508 IAQREVQAPGRGLHHHQRTDRRRVLSFG 591
           +A R V A G G H HQR  RR+ L  G
Sbjct: 91  LATRTVPAAGIGSHSHQRPHRRQALHAG 118


>04_03_0937 +
           20923705-20923833,20924001-20924012,20924413-20924473,
           20924523-20924749,20924859-20925104,20925645-20925657,
           20927681-20928302,20928320-20928949,20928960-20929224
          Length = 734

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 352 TRRRRKLYRC*QDLYQGYLSHS*LLSHWRATDPKHE 459
           +RRRR LY    D  +GY  H   LSH      +HE
Sbjct: 272 SRRRRHLYLVLDDWKEGYSLHKLDLSHVSGDGGEHE 307


>03_06_0643 +
           35248597-35250585,35250663-35250773,35250867-35250971,
           35252215-35252304
          Length = 764

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 482 YANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESV 604
           Y N +H  +   V  RH +      R+QT+G +S L+ E +
Sbjct: 724 YGNQLHPSNTMQVFIRHTEGKNSFSRKQTQGRHSPLDVEQI 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,041,847
Number of Sequences: 37544
Number of extensions: 428147
Number of successful extensions: 1107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)