Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0529
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   8e-27
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_58103| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score =  117 bits (282), Expect = 8e-27
 Identities = 53/73 (72%), Positives = 63/73 (86%)
 Frame = +2

Query: 464 RNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAA 643
           +  LDL+ANVVH +SLP +K RH ++D +IIREQTEGEY++LEHESVPGVVE LKIIT  
Sbjct: 89  KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIITRR 148

Query: 644 KSERIAKFAFDYA 682
           KS+RIAKFAFDYA
Sbjct: 149 KSQRIAKFAFDYA 161



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/50 (50%), Positives = 30/50 (60%)
 Frame = +2

Query: 134 SSVTTEKNVCYAPFGALQPRATKEGRIKCTLIPGDGVGPELVYAVQEVFK 283
           S+ T E +   APFG         GR   TLIPGDGVGPELV  V+++FK
Sbjct: 49  STTTEESDDLTAPFG---------GRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = -3

Query: 370 VYDVFEWCTKCWIHFRKEKGFKVHWNAGRLENFLYSVDKLRTYTVPRNQGAFDTTF--LC 197
           +Y  F     CW+HF+K+K  + H N     +F  + D L    +  N+G  D  F    
Sbjct: 46  MYVRFGGTASCWMHFKKDKALE-HKN---FTDFTITPDDLERIAMIGNKGGVDVLFGLNA 101

Query: 196 CPRLQGSKWCIT 161
           C R     W  T
Sbjct: 102 CLRNSDGTWNYT 113


>SB_58103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 621 HSTTPGTDSCSKAEYSPSVCSLMMMQSTSWCLHFTLGND 505
           +STTP T S +K  Y  S   L+   + +WC +   GND
Sbjct: 87  NSTTPVTSSAAKPGYESSKAELLFGSNNAWCAND--GND 123


>SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 169 CITYIFLRCYRTCVYTLSNMLRSLHNSSKNIPA 71
           C+ ++F+  YR   + L  +LRS H++ +NIP+
Sbjct: 315 CLYFVFIENYR---HGLRRVLRSAHDARRNIPS 344


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 VFKAASIPVDFESFFFSEVNPTLSAPLEDV 364
           VFK A+ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 425 SHTGELQTLNMKLRNALDLYANV-VHVKSLPNVKCRHQDVD 544
           SHTGE+Q +  +LR   DL ++V +    L N   R Q ++
Sbjct: 159 SHTGEVQAMQTQLRQFQDLVSSVTMENAQLKNASMRAQQLN 199


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 122 GVHTSSVTTEKNVCYAPFGALQPRATKEGRIKC---TLIPGDGVGPELVY 262
           G H SS T+E    Y P G+  P  T+ GRI     +++   G+  +L Y
Sbjct: 141 GFHASSATSEVRTFYIPEGS--PTGTEVGRIPVRVQSILLASGIPADLEY 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,163,662
Number of Sequences: 59808
Number of extensions: 499995
Number of successful extensions: 1318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)