Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0529
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 154 5e-38
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 154 6e-38
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 153 1e-37
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 144 4e-35
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 144 4e-35
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 138 2e-33
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 91 8e-19
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 40 0.002
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 36 0.025
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 35 0.044
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 34 0.10
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 33 0.23
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 31 0.95
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 31 0.95
At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /... 30 1.3
At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /... 30 1.3
At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /... 30 1.3
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 28 6.7
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 28 6.7
At5g34358.1 68418.m04025 hypothetical protein 27 8.8
At1g40133.1 68414.m04768 hypothetical protein 27 8.8
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 154 bits (374), Expect = 5e-38
Identities = 81/154 (52%), Positives = 108/154 (70%)
Frame = +2
Query: 221 TLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIK 400
TLIPGDGVGP + AVQ+V +A PV FE F EV+ + + E ++ SI NK+C+K
Sbjct: 41 TLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPF---EVHGDMKSLPEGLLESIKKNKVCLK 97
Query: 401 GILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEY 580
G L TP G + +LN+ LR LDL+A++V+ +LP + RH++VD ++IRE TEGEY
Sbjct: 98 GGLKTPV---GGGVSSLNVNLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEY 154
Query: 581 SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
+ LEHE VPGVVE LK+IT SERIAK+AF+YA
Sbjct: 155 AGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 188
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 154 bits (373), Expect = 6e-38
Identities = 78/154 (50%), Positives = 109/154 (70%)
Frame = +2
Query: 221 TLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIK 400
TLIPGDG+GP + AV++V +A PV FE + EV + E+V+ S+ NK+C+K
Sbjct: 42 TLIPGDGIGPLVTGAVEQVMEAMHAPVHFERY---EVLGNMRKVPEEVIESVKRNKVCLK 98
Query: 401 GILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEY 580
G LATP G + +LNM+LR LD++A++V+ ++P + RH++VD ++IRE TEGEY
Sbjct: 99 GGLATPV---GGGVSSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEGEY 155
Query: 581 SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
S LEHE VPGVVE LK+IT SERIA++AF+YA
Sbjct: 156 SGLEHEVVPGVVESLKVITKFCSERIARYAFEYA 189
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 153 bits (370), Expect = 1e-37
Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 1/190 (0%)
Frame = +2
Query: 116 GKGVHTSSVTTEKNVCYAPF-GALQPRATKEGRIKCTLIPGDGVGPELVYAVQEVFKAAS 292
G G+ T SVT Y P G PRA TLIPGDG+GP + AV++V +A
Sbjct: 18 GSGIQTRSVT------YMPRPGDGAPRAV-------TLIPGDGIGPLVTNAVEQVMEAMH 64
Query: 293 IPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNA 472
P+ FE + +V+ +S +V+ SI NK+C+KG L TP G + +LN++LR
Sbjct: 65 APIFFEKY---DVHGEMSRVPPEVMESIRKNKVCLKGGLKTPV---GGGVSSLNVQLRKE 118
Query: 473 LDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSE 652
LDL+A++V+ +LP + RH++VD ++IRE TEGEY+ LEHE VPGVVE LK+IT SE
Sbjct: 119 LDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSE 178
Query: 653 RIAKFAFDYA 682
RIAK+AF+YA
Sbjct: 179 RIAKYAFEYA 188
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 144 bits (350), Expect = 4e-35
Identities = 81/159 (50%), Positives = 107/159 (67%), Gaps = 2/159 (1%)
Frame = +2
Query: 212 IKCTLIPGDGVGPELVYAVQEVFKAASIPVDF-ESFFFSEVNPTLSAPLE-DVVNSIAVN 385
IK TL PGDG+GPE+ +V++VF AA + +D+ E F +EV+P ++ L D + S+ N
Sbjct: 44 IKATLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKN 103
Query: 386 KICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQ 565
K+ +KG +ATP G ++LN+ LR L+LYANV SLP K R+ DVD I IRE
Sbjct: 104 KVGLKGPMATP--IGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIREN 160
Query: 566 TEGEYSALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
TEGEYS LEH+ V GVVE LKIIT S R+A++AF YA
Sbjct: 161 TEGEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYA 199
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 144 bits (350), Expect = 4e-35
Identities = 79/154 (51%), Positives = 105/154 (68%)
Frame = +2
Query: 221 TLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIK 400
TLIPGDGVGP + AVQ+V +A PV FE F EV+ + + E ++ SI NK+C+K
Sbjct: 41 TLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPF---EVHGDMKSLPEGLLESIKKNKVCLK 97
Query: 401 GILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEY 580
G L TP G + +LN+ LR LDL+A++V+ +LP + RH++VD ++IRE TEGEY
Sbjct: 98 GGLKTPV---GGGVSSLNVNLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEY 154
Query: 581 SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
+ LEHE VPGVVE LK SERIAK+AF+YA
Sbjct: 155 AGLEHEVVPGVVESLKFC----SERIAKYAFEYA 184
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 138 bits (335), Expect = 2e-33
Identities = 76/159 (47%), Positives = 105/159 (66%), Gaps = 2/159 (1%)
Frame = +2
Query: 212 IKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFF-SEVNPTLSAPLE-DVVNSIAVN 385
I TL PGDG+GPE+ +V++VF A +P+++E + +E++P + L + + S+ N
Sbjct: 44 ITATLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRN 103
Query: 386 KICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQ 565
K+ +KG +ATP G ++LN+ LR L+LYANV SLP K R+ DVD I IRE
Sbjct: 104 KVGLKGPMATP--IGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIREN 160
Query: 566 TEGEYSALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
TEGEYS LEH+ V GVVE LKIIT S R+A++AF YA
Sbjct: 161 TEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYA 199
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 90.6 bits (215), Expect = 8e-19
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 263 AVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGEL 442
AV +V A PV FE++ N ++ +VV+SI NK+C+ G +
Sbjct: 15 AVHQVMDAMQAPVYFETYIIKGKN--MNHLTWEVVDSIRKNKVCLNGRVNN--------- 63
Query: 443 QTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVEC 622
+L R LDL+A++V +L RH++VD ++IRE TEGEY+ EHE VPGV+E
Sbjct: 64 -SLCGGARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVVPGVIES 122
Query: 623 LKI-ITAAKSERIAKFAFDYA 682
++ +T S+RIAK+AF+YA
Sbjct: 123 FQVTMTKFWSDRIAKYAFEYA 143
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Frame = +2
Query: 209 RIKCTLIPGDGVGPELVYAVQEVFKAA----SIPVDFESF-FFSEVNPTLSAPLEDVVN- 370
R TL+PGDG+GPE++ + V + A + DF+ F + PL + +
Sbjct: 43 RYNITLLPGDGIGPEVISVAKNVLQKAGFLQGLEFDFQEMPFGGAALDLVGVPLPEETST 102
Query: 371 ----SIAVNKICIKGILATPDFSH-TGELQTLNMKLRNALDLYANVVHVKSLPNV----- 520
S A+ I G + H E+ LN +R L+++AN+ LP +
Sbjct: 103 AAKQSDAILLGAIGGYKWDKNEKHLRPEMGLLN--IRRDLNVFANLRPATVLPQLVDAST 160
Query: 521 --KCRHQDVDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDY 679
K Q VD +I+RE T G Y +E+ V +I A + +RIA+ AF+
Sbjct: 161 LKKEVAQGVDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAFET 220
Query: 680 A 682
A
Sbjct: 221 A 221
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 35.9 bits (79), Expect = 0.025
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Frame = +2
Query: 209 RIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVN------PTLSAPL-EDVV 367
R TL+PGDG+GPE+V + V + A ++ F F E+ + PL E+ +
Sbjct: 42 RYTITLLPGDGIGPEVVSIAKNVLQQAG-SLEGVEFNFREMPIGGAALDLVGVPLPEETI 100
Query: 368 NSIAVNKICIKGILATPDFSHTGE-LQTLN--MKLRNALDLYANVVHVKSLPNV------ 520
++ + + G + + + + L+ +++R AL ++AN+ LP +
Sbjct: 101 SAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTL 160
Query: 521 -KCRHQDVDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
+ + VD +++RE T G Y +E+ V ++ A + +RIA+ AF+ A
Sbjct: 161 KREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETA 220
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 35.1 bits (77), Expect = 0.044
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 22/180 (12%)
Frame = +2
Query: 209 RIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVN------PTLSAPL-EDVV 367
R L+PGDG+GPE++ + V + A E F F E+ + PL E+
Sbjct: 46 RYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLE-FDFKEMPVGGAALDLVGVPLPEETF 104
Query: 368 NSIAVNKICIKGILATPDFSHTGELQTLNMK---LRNALDLYANVVHVKSLPNV------ 520
+ ++ + G + + + M LR L ++AN+ LP +
Sbjct: 105 TAAKLSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTL 164
Query: 521 -KCRHQDVDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 682
K + VD +I+RE T G Y +E+ V +I A + +RIA+ AF+ A
Sbjct: 165 KKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETA 224
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 672 KANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTLGND 505
K +F + F +I KH PG CS+ Y + ++ + S LHFT N+
Sbjct: 199 KDDFLVAGGFQGELICKHLDRPGVSFCSRMTYDDNAITNAIEIYNKPSGALHFTASNN 256
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -1
Query: 663 FAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTLGND 505
F + F +I KH PG CS+ Y + ++ + S LHFT N+
Sbjct: 200 FLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIYNKPSGALHFTASNN 254
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 672 KANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTLGND 505
K + F +I KH PG CS+ Y+ + ++ + +++S LHF N+
Sbjct: 199 KERLLVAGGFQGELICKHLDRPGVSFCSRTTYTENAITNAVDIYRNSSGALHFMASNN 256
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 672 KANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTLGND 505
K + F +I KH PG CS+ Y+ + ++ + +++S LHF N+
Sbjct: 193 KERLLVAGGFQGELICKHLDRPGVSFCSRTTYTENAITNAVDIYRNSSGALHFMASNN 250
>At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
phosphatidylinositol/phosphatidylcholine transfer
protein SP:P24280 [Saccharomyces cerevisiae (Baker's
yeast)]
Length = 252
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 254 LVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKG 403
LV + KAA + VD++ + S V PT P +V + + K+C++G
Sbjct: 35 LVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQG 84
>At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
phosphatidylinositol/phosphatidylcholine transfer
protein SP:P24280 [Saccharomyces cerevisiae (Baker's
yeast)]
Length = 239
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 254 LVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKG 403
LV + KAA + VD++ + S V PT P +V + + K+C++G
Sbjct: 22 LVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQG 71
>At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
phosphatidylinositol/phosphatidylcholine transfer
protein SP:P24280 [Saccharomyces cerevisiae (Baker's
yeast)]
Length = 239
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 254 LVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKG 403
LV + KAA + VD++ + S V PT P +V + + K+C++G
Sbjct: 22 LVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQG 71
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 323 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHV 502
S NP +P+ ++ +K K + A P F +QTLN+ L N+ + A V
Sbjct: 1599 STSNPDQVSPVHSATTALRSDKAADKDLDAPPGFDSGSHVQTLNV-LENSSERKAFAVKK 1657
Query: 503 KSL 511
+ L
Sbjct: 1658 RPL 1660
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 323 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHV 502
S NP +P+ ++ +K K + A P F +QTLN+ L N+ + A V
Sbjct: 1599 STSNPDQVSPVHSATTALRSDKAADKDLDAPPGFDSGSHVQTLNV-LENSSERKAFAVKK 1657
Query: 503 KSL 511
+ L
Sbjct: 1658 RPL 1660
>At5g34358.1 68418.m04025 hypothetical protein
Length = 116
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 499 REVIAQREVQAPGRGLHHHQRTDRR 573
REVI+ VQ GRG H H R R
Sbjct: 48 REVISDLRVQEEGRGEHPHARPPTR 72
>At1g40133.1 68414.m04768 hypothetical protein
Length = 663
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 191 RATKEGRIK-CTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVV 367
R KE R+ LI P+ +++ + PVD F EV+PT +APL + +
Sbjct: 314 RLAKEKRLADAGLISPQAASPDETQD-RDIVPDVTAPVDPTPFEAQEVDPTAAAPLPEAI 372
Query: 368 NSIAVNKICIKGILATPDFS 427
++ + + T D +
Sbjct: 373 VALPASDKAVGKRARTDDLT 392
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,284
Number of Sequences: 28952
Number of extensions: 345105
Number of successful extensions: 927
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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