Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0528
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.21 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 68   VCVRSCSLVPNSCSPGIH 15
            VCV    LVP +C+PG+H
Sbjct: 1223 VCVNG-HLVPQNCAPGLH 1239


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 377 SARAWLNLTSWSTASFPTRASPTK 306
           S R + N+      S PT  SPTK
Sbjct: 421 SPRVYGNVNENQDCSTPTENSPTK 444


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 314 PTKSTVSGSLT-----AMSLARARIRGSLSCIRPAVSMSTTSVLVSDAYRI 177
           P K+T S S+T     + S+ R R+R      +   S+S TS    D Y++
Sbjct: 39  PLKTTQSVSVTKDQDVSSSVNRFRLRSRPGHRKTDNSLSATSKKDKDGYKV 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,952
Number of Sequences: 336
Number of extensions: 1541
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)