Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0528
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 81 7e-17
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 42 5e-05
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 29 0.37
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 0.65
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.1
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 25 4.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 8.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 8.0
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 8.0
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 81.4 bits (192), Expect = 7e-17
Identities = 41/119 (34%), Positives = 65/119 (54%)
Frame = +1
Query: 121 VTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDT 300
+ L+ +GYGKD++ + A+ YA DV+LIDTAGR +++ LM +L K + D
Sbjct: 404 IELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDK 463
Query: 301 VLFVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVLTKFDTIDDKVGAAISMTY 477
+ V EALVG +++ Q F +L +DG +++K DT+ VG + M Y
Sbjct: 464 IFQVAEALVGTDSLAQAKHFQASLYH-------RPLDGFIISKVDTVGQLVGVMVGMVY 515
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 41.9 bits (94), Expect = 5e-05
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA E + + + DV+++DT+GR Q + L + ++ PD + + +A +G
Sbjct: 167 DPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIG 226
Query: 331 NEAVDQLVKFNQALADYSS 387
A Q F + AD+ +
Sbjct: 227 QAAESQSKAFKET-ADFGA 244
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.37
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 307 FVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVLTKFDTIDDKV 453
F VGN+ D++++ N+ L + S +S I +DT+D KV
Sbjct: 357 FTPPVQVGNDREDEVLEKNKELENVSKNSISVQISESEKVSYDTVDSKV 405
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 28.3 bits (60), Expect = 0.65
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 249 LVVLHSARSVDE-HDVGFSVRRVSYCFHCYAGRVFAVSLLVERDHVSCVVARGR 91
L +L+S+RSV+E HDV ++ + F C+ +V S + + D V +A+ R
Sbjct: 878 LPILYSSRSVEEVHDVTNAI-ATQFPFACFDSKVEKYSYIDDGDLVVYEIAKRR 930
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.1
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Frame = -2
Query: 473 VIDMAAPTLSSIVSNLVSTIPSMTCGLLDEL*SARAW---LNLTSWSTASFPTRA----- 318
+ +A S+ VSN+ S +PS T +L ++ L L+S S+ + T +
Sbjct: 754 ITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYN 813
Query: 317 ----SPTKSTVSGSLTAMSLARARIRGSLSCIRPAVSMSTTSVLVSDAYRIASIAMPAA 153
+PT S+ + S + SLA +G S ++++ +TS + S AY S+ A
Sbjct: 814 TSFHAPTVSSTTSSSSTTSLAAN--KGVNSNSITSLNLESTSSVTSTAYTTDSVTSTTA 870
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 223 TAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADY 381
T+G +P++RA+ + D +FV E +D++VK QA A Y
Sbjct: 2 TSGPHNLEDPIVRAIRQKNQAPSHDFTIFVQEDGSSVSTLDRVVKNVQAPATY 54
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -2
Query: 326 TRASPTKSTVSGSLTAMSLARARIRGSLSCIRPAVSMSTTS 204
T+A+ TKS+V +++ + ++ S+ I+P S ++T+
Sbjct: 114 TKAADTKSSVEATISPLKDTKSPSNASVFPIKPTESKTSTT 154
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 6.1
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +1
Query: 250 PLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLV--KFNQALADYSSSSSPHVIDGIVL 423
PL+ + + P L VG ALV + VD + KF + + ++ ++ ++
Sbjct: 675 PLIVVREECTDLKSPTLFLDVGRALVHTQLVDDAIIDKFRKLQSKKINNEQLKQLENLMY 734
Query: 424 TKFDTIDDKVGAAISMTYITG 486
KF V I Y TG
Sbjct: 735 DKFTISLFNVRCLIGPDYETG 755
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -1
Query: 480 DVRHRYGGADFIVDSIELGEHYSVDDVRTAGRAVVGEGLVELDQLVDGLVPYESLAHE 307
D++ G DF+V+ I+ H TA V LV +D + V E++ +
Sbjct: 88 DMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ 145
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 8.0
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = -2
Query: 359 NLTSWSTASFPTRAS--PTKSTVSGSLTAMSLARARIRGSLSCIRPAVSMSTTSVLVSDA 186
+L S ST S +S + S S S+T+ SLA + + S + + + STTS + +
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSST--TSSSLASSSTNSTTSATPTSS 175
Query: 185 YRIASIAMPAAS 150
+S++ AAS
Sbjct: 176 ATSSSLSSTAAS 187
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -1
Query: 480 DVRHRYGGADFIVDSIELGEHYSVDDVRTAGRAVVGEGLVELDQLVDGLVPYESLAHE 307
D++ G DF+V+ I+ H TA V LV +D + V E++ +
Sbjct: 88 DMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ 145
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 8.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 301 VLFVGEALVGNEA-VDQLVK----FNQALADYSSSSSPHVIDGIVLTKFDT 438
VL + L G+ A V+ L + FNQ L Y +S + DG+ + DT
Sbjct: 316 VLMIPPQLFGDRAEVESLRENFESFNQPLPSYQNSMYDRLYDGLSYSNLDT 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,768
Number of Sequences: 5004
Number of extensions: 27503
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -