Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0528
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)                172   1e-43
SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.88 
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    29   2.0  
SB_21740| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.073)          28   3.6  
SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)                     28   3.6  
SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_9638| Best HMM Match : WD40 (HMM E-Value=8.4e-09)                   28   3.6  
SB_57329| Best HMM Match : DUF465 (HMM E-Value=7.1)                    28   4.7  
SB_47651| Best HMM Match : DUF465 (HMM E-Value=7.1)                    28   4.7  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   4.7  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             27   6.2  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)                       27   8.2  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   27   8.2  
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)                        27   8.2  

>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
          Length = 440

 Score =  172 bits (418), Expect = 1e-43
 Identities = 86/139 (61%), Positives = 99/139 (71%)
 Frame = +1

Query: 40  GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
           G  EQLRTH R                V LYEKGYGKDAA IAM+AI +A + + DVVL+
Sbjct: 235 GAVEQLRTHVRHLNALHPPAHANGPPSVLLYEKGYGKDAASIAMDAINFAREQRVDVVLV 294

Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
           DTAGRMQDNEPLMRAL+KLI +N+PD VLFVGEALVGNEAVDQL KFNQALAD+SS   P
Sbjct: 295 DTAGRMQDNEPLMRALSKLIKLNDPDLVLFVGEALVGNEAVDQLKKFNQALADHSSQDRP 354

Query: 400 HVIDGIVLTKFDTIDDKVG 456
            +IDGI+L     +  + G
Sbjct: 355 RLIDGILLPSLTLLMTRFG 373


>SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 11  TSGSPGCRNSARGSSCARTRDTSTRCTRPRATTHDTWSRSTRRDTAKTRPA 163
           TS     R ++R +  +RT+D   +  RPR     T +  T+   AK R A
Sbjct: 31  TSKPQAARQASRKTKTSRTQDQDKQDARPRQARRKTKTSKTQDQAAKPRQA 81


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = -2

Query: 434  SNLVSTIPSMTCGLLDEL*SARAWLNLTSWSTASFPTRASPTKSTVSGSLTAMSLARARI 255
            S+L S+ PS++  L     SA      TS S++SFP+  S ++     S T   ++ + +
Sbjct: 866  SSLSSSFPSLSSRLSSASSSASPPGTTTSSSSSSFPS-LSLSQHDPHSSSTTEEMSSSAL 924

Query: 254  RGSLSCIRP---AVSMSTTSVLVSDAYRIASIAMPAASLPYP 138
              SLS   P    +S+ST  +  S     +S+   +   P P
Sbjct: 925  TSSLSPSSPHGAPLSLSTEELSTSSLSITSSLPQQSMQSPSP 966


>SB_21740| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.073)
          Length = 916

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 211 VLIDTAGRMQD-NEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSS 387
           +L ++  + +D ++P    L +++AV    + L+      G+ +VD+ V +  AL  Y+ 
Sbjct: 148 MLAESLDKCEDPDDPTFNKLLRILAVQAMSSALYFS---TGSVSVDEFVHYGLALDRYTH 204

Query: 388 SSSP 399
            +SP
Sbjct: 205 FTSP 208


>SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)
          Length = 428

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 92  GCSALRCRVCVRSCSLVPNSCSPG 21
           GC    CR+   +C +  NSCSPG
Sbjct: 144 GCHRCECRMEGINCEVGSNSCSPG 167


>SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 256 MRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVL 423
           MR + +L A+N+   +   G+ L G+     LVK    + DY      H    + L
Sbjct: 542 MREIDQLRALNKEYEIRVEGQRLQGSNKSQDLVKLKTHMKDYKDKLEEHKFQVVAL 597


>SB_9638| Best HMM Match : WD40 (HMM E-Value=8.4e-09)
          Length = 781

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 104 WRAGGCSALRCRVCVRSCSLVPNSCSPG 21
           WR G   +   R  V S S   NSCSPG
Sbjct: 495 WRLGESGSASARESVPSSSTPSNSCSPG 522


>SB_57329| Best HMM Match : DUF465 (HMM E-Value=7.1)
          Length = 75

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 256 MRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSPH 402
           MR + +L A+N+   +   G+ L G+     LVK    + DY      H
Sbjct: 24  MREIDQLRALNKEYEIRVEGQRLQGSNKSQDLVKLKMHMKDYKDKLEEH 72


>SB_47651| Best HMM Match : DUF465 (HMM E-Value=7.1)
          Length = 75

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 256 MRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSPH 402
           MR + +L A+N+   +   G+ L G+     LVK    + DY      H
Sbjct: 24  MREIDQLRALNKEYEIRVEGQRLQGSNKSQDLVKLKMHMKDYKDKLEEH 72


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 32   RNSARGSSCARTRDTSTRCTRPRATTHDTWSRSTRRDTAKTRP 160
            +     + C        R T+P  T H T S  TR+  +K  P
Sbjct: 910  KEKTNAAECVDDNKKENRVTQPSVTNHVTQSNVTRKGESKKSP 952


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 45 RAEFLQPGDPLV 10
          R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  ARTRDTSTRCTRPRAT-THDTWSRSTRRDTAKTR 157
           A+TR T TR TRPR T    T +R T+    +TR
Sbjct: 445 AKTRITPTRITRPRITRKRITLTRITQTRITRTR 478


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 344 STASFPTRASPTKSTVSGSLTAMSLARARIRGSLSCIRPAVSMSTTSVLVSDAYRIASIA 165
           ST S  T+  PT+STV+  +T  S+   +     +   PA    T SV+   A   + + 
Sbjct: 309 STESAVTQPEPTESTVTKQITTESVVTKQTPIESAVTMPA---PTESVVTMPAPTESVVT 365

Query: 164 MPA 156
           MPA
Sbjct: 366 MPA 368


>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +2

Query: 32  RNSARGSSCARTR----DTSTRCTRPRATT-HDTWSRST-RRDTAK 151
           R S  G+  ART     DT+ R T    TT HDT   ST +RDTA+
Sbjct: 2   RVSVTGTVLARTTRQLYDTTQRSTTQHVTTQHDTTQDSTAQRDTAQ 47


>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
          Length = 410

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKL 276
           D   IA E +    +   +++++DT+GR +  E L   + ++
Sbjct: 82  DPVIIAQEGVEKFKEENFEIIIVDTSGRHKQEESLFEEMLQV 123


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 344 STASFPTRASPTKSTVSGSLTAMSLARARIRGSLSCIRPAVSMSTTSVLVSDAYRIASIA 165
           ST S  T+  PT+STV+  +T  S+   +     +   PA    T SV+   A   + + 
Sbjct: 61  STESAVTQPEPTESTVTKQITTESVVTKQTPIESAVTMPA---PTESVVTMPAPTESVVT 117

Query: 164 MPA 156
           MPA
Sbjct: 118 MPA 120


>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
          Length = 427

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 32  RNSARGSSCARTRDTSTRCTRPRATTHDTWSRSTRRDTAKTRPA*QWKQYDTRLTLKPTS 211
           +NS +  +  R + T  R  R R  T  TW + +R+         +     +RLT K ++
Sbjct: 91  KNSFKFVAAKRIQRTHGRTQRTRQNTTTTWPQGSRQIKKSHGIKQKITAEQSRLTAKESN 150

Query: 212 CSSTLRAE 235
            ++ L AE
Sbjct: 151 STAELTAE 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,186
Number of Sequences: 59808
Number of extensions: 237487
Number of successful extensions: 1022
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)