Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0528
(486 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for ... 213 4e-55
CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein. 213 4e-55
BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition part... 213 4e-55
BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition part... 213 4e-55
BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition part... 213 4e-55
X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein. 38 0.019
U51920-1|AAC50994.1| 504|Homo sapiens signal recognition partic... 38 0.019
BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition part... 38 0.019
BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition part... 38 0.019
AJ271448-1|CAB93534.2| 495|Homo sapiens protein phosphatase 4 r... 32 0.93
AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein. 32 1.2
AL353692-3|CAI16236.1| 5596|Homo sapiens MDN1, midasin homolog (... 31 2.8
AL158813-2|CAI13203.1| 5596|Homo sapiens MDN1, midasin homolog (... 31 2.8
AL096678-1|CAI42279.1| 5596|Homo sapiens MDN1, midasin homolog (... 31 2.8
AF503925-1|AAM77722.1| 5596|Homo sapiens midasin protein. 31 2.8
AB002299-1|BAA20761.2| 3210|Homo sapiens KIAA0301 protein. 31 2.8
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 5.0
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 5.0
AK128227-1|BAC87337.1| 153|Homo sapiens protein ( Homo sapiens ... 29 6.6
>X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for
docking protein (signal recognition particle receptor).
).
Length = 638
Score = 213 bits (519), Expect = 4e-55
Identities = 108/148 (72%), Positives = 117/148 (79%)
Frame = +1
Query: 40 GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
G EQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+
Sbjct: 460 GAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLV 519
Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
DTAGRMQDN PLM ALAKLI VN PD VLFVGEALVGNEAVDQLVKFN+ALAD+S + +P
Sbjct: 520 DTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTP 579
Query: 400 HVIDGIVLTKFDTIDDKVGAAISMTYIT 483
+IDGIVLTKFDTIDDKVGAAISMTYIT
Sbjct: 580 RLIDGIVLTKFDTIDDKVGAAISMTYIT 607
>CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein.
Length = 638
Score = 213 bits (519), Expect = 4e-55
Identities = 108/148 (72%), Positives = 117/148 (79%)
Frame = +1
Query: 40 GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
G EQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+
Sbjct: 460 GAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLV 519
Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
DTAGRMQDN PLM ALAKLI VN PD VLFVGEALVGNEAVDQLVKFN+ALAD+S + +P
Sbjct: 520 DTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTP 579
Query: 400 HVIDGIVLTKFDTIDDKVGAAISMTYIT 483
+IDGIVLTKFDTIDDKVGAAISMTYIT
Sbjct: 580 RLIDGIVLTKFDTIDDKVGAAISMTYIT 607
>BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 213 bits (519), Expect = 4e-55
Identities = 108/148 (72%), Positives = 117/148 (79%)
Frame = +1
Query: 40 GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
G EQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+
Sbjct: 460 GAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLV 519
Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
DTAGRMQDN PLM ALAKLI VN PD VLFVGEALVGNEAVDQLVKFN+ALAD+S + +P
Sbjct: 520 DTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTP 579
Query: 400 HVIDGIVLTKFDTIDDKVGAAISMTYIT 483
+IDGIVLTKFDTIDDKVGAAISMTYIT
Sbjct: 580 RLIDGIVLTKFDTIDDKVGAAISMTYIT 607
>BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 213 bits (519), Expect = 4e-55
Identities = 108/148 (72%), Positives = 117/148 (79%)
Frame = +1
Query: 40 GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
G EQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+
Sbjct: 460 GAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLV 519
Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
DTAGRMQDN PLM ALAKLI VN PD VLFVGEALVGNEAVDQLVKFN+ALAD+S + +P
Sbjct: 520 DTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTP 579
Query: 400 HVIDGIVLTKFDTIDDKVGAAISMTYIT 483
+IDGIVLTKFDTIDDKVGAAISMTYIT
Sbjct: 580 RLIDGIVLTKFDTIDDKVGAAISMTYIT 607
>BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 213 bits (519), Expect = 4e-55
Identities = 108/148 (72%), Positives = 117/148 (79%)
Frame = +1
Query: 40 GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
G EQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+
Sbjct: 460 GAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLV 519
Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
DTAGRMQDN PLM ALAKLI VN PD VLFVGEALVGNEAVDQLVKFN+ALAD+S + +P
Sbjct: 520 DTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTP 579
Query: 400 HVIDGIVLTKFDTIDDKVGAAISMTYIT 483
+IDGIVLTKFDTIDDKVGAAISMTYIT
Sbjct: 580 RLIDGIVLTKFDTIDDKVGAAISMTYIT 607
>X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.019
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA E + + +++++DT+GR + + L + ++ +PD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 331 NEAVDQLVKF 360
Q F
Sbjct: 227 QACEAQAKAF 236
>U51920-1|AAC50994.1| 504|Homo sapiens signal recognition particle
protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.019
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA E + + +++++DT+GR + + L + ++ +PD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 331 NEAVDQLVKF 360
Q F
Sbjct: 227 QACEAQAKAF 236
>BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.019
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA E + + +++++DT+GR + + L + ++ +PD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 331 NEAVDQLVKF 360
Q F
Sbjct: 227 QACEAQAKAF 236
>BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.019
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA E + + +++++DT+GR + + L + ++ +PD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 331 NEAVDQLVKF 360
Q F
Sbjct: 227 QACEAQAKAF 236
>AJ271448-1|CAB93534.2| 495|Homo sapiens protein phosphatase 4
regulatory subunit 2 protein.
Length = 495
Score = 32.3 bits (70), Expect = 0.93
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 119 MCRA-WWRAGGCSALRCRVCVRSCSL 45
MC+A WRAGG RC +C RSCSL
Sbjct: 1 MCQAPCWRAGGSGLGRCSLC-RSCSL 25
>AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein.
Length = 589
Score = 31.9 bits (69), Expect = 1.2
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = -2
Query: 455 PTLSSIVSNLVSTIPSMTC-GLLDEL*SARAWLNLTSWSTASFPTRASPTKSTVSGSLTA 279
PT +S +S+L S+I S T D + S L +S A+ PT T+ST + T
Sbjct: 400 PTANSTLSSLTSSILSSTLVPSTDMITSHTTNLTRSSPLLATLPTTI--TRSTPTSETTY 457
Query: 278 MSLARARIRGSLSCIRPAVSMSTT 207
+ + ++GS + IR + SM+ T
Sbjct: 458 PTSPTSTVKGSTTSIRYSTSMTGT 481
>AL353692-3|CAI16236.1| 5596|Homo sapiens MDN1, midasin homolog
(yeast) protein.
Length = 5596
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 217 IDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGN--EAVDQLVKFNQALADYSSS 390
ID + M DN A L + T+L VG+ V + E+V L F++ +DYS S
Sbjct: 5389 IDDSSSMVDNHTKQLAFESLAVIGNALTLLEVGQIAVCSFGESVKLLHPFHEQFSDYSGS 5448
>AL158813-2|CAI13203.1| 5596|Homo sapiens MDN1, midasin homolog
(yeast) protein.
Length = 5596
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 217 IDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGN--EAVDQLVKFNQALADYSSS 390
ID + M DN A L + T+L VG+ V + E+V L F++ +DYS S
Sbjct: 5389 IDDSSSMVDNHTKQLAFESLAVIGNALTLLEVGQIAVCSFGESVKLLHPFHEQFSDYSGS 5448
>AL096678-1|CAI42279.1| 5596|Homo sapiens MDN1, midasin homolog
(yeast) protein.
Length = 5596
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 217 IDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGN--EAVDQLVKFNQALADYSSS 390
ID + M DN A L + T+L VG+ V + E+V L F++ +DYS S
Sbjct: 5389 IDDSSSMVDNHTKQLAFESLAVIGNALTLLEVGQIAVCSFGESVKLLHPFHEQFSDYSGS 5448
>AF503925-1|AAM77722.1| 5596|Homo sapiens midasin protein.
Length = 5596
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 217 IDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGN--EAVDQLVKFNQALADYSSS 390
ID + M DN A L + T+L VG+ V + E+V L F++ +DYS S
Sbjct: 5389 IDDSSSMVDNHTKQLAFESLAVIGNALTLLEVGQIAVCSFGESVKLLHPFHEQFSDYSGS 5448
>AB002299-1|BAA20761.2| 3210|Homo sapiens KIAA0301 protein.
Length = 3210
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 217 IDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGN--EAVDQLVKFNQALADYSSS 390
ID + M DN A L + T+L VG+ V + E+V L F++ +DYS S
Sbjct: 3003 IDDSSSMVDNHTKQLAFESLAVIGNALTLLEVGQIAVCSFGESVKLLHPFHEQFSDYSGS 3062
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 32 RNSARGSSCARTRDTSTRCTRPRATTHDTWSRSTRRDTAKTRPA 163
R+ +R S +RTR S TRPR SRS RR + + RP+
Sbjct: 277 RSRSRSKSRSRTRSRSPSHTRPRRRHR---SRSRRRPSPRRRPS 317
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 32 RNSARGSSCARTRDTSTRCTRPRATTHDTWSRSTRRDTAKTRPA 163
R+ +R S +RTR S TRPR SRS RR + + RP+
Sbjct: 277 RSRSRSKSRSRTRSRSPSHTRPRRRHR---SRSRRRPSPRRRPS 317
>AK128227-1|BAC87337.1| 153|Homo sapiens protein ( Homo sapiens
cDNA FLJ46360 fis, clone TESTI4049863. ).
Length = 153
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -2
Query: 296 SGSLTAMSLARA-RIRGSLSCIRPAVSMSTTSVLVSDAYRIASIAMP-AASLPYPFS*SV 123
SG+ + AR R++G L P++S+S A R+ +++P A L F +
Sbjct: 61 SGASSWRKAARGLRLQGGLRSTAPSLSLSYPVASSIPAGRLHFLSLPPTAGLLLLFGDRI 120
Query: 122 TMCRAWWRAGGCSAL 78
++CR W A S L
Sbjct: 121 SLCRPGWSAVARSRL 135
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,693,474
Number of Sequences: 237096
Number of extensions: 1068652
Number of successful extensions: 3262
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3252
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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