Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0528
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30600.1 68417.m04341 signal recognition particle receptor al... 182 1e-46
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 59 1e-09
At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot... 50 1e-06
At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot... 49 1e-06
At1g15310.1 68414.m01832 signal recognition particle 54 kDa prot... 48 4e-06
At2g45770.1 68415.m05693 signal recognition particle receptor pr... 38 0.003
At5g63140.1 68418.m07928 calcineurin-like phosphoesterase family... 34 0.058
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 30 0.72
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic... 28 3.8
At3g48460.1 68416.m05290 GDSL-motif lipase/hydrolase family prot... 28 3.8
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 27 5.1
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 27 5.1
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 27 5.1
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ... 27 5.1
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 27 5.1
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 6.7
At4g14605.1 68417.m02247 mitochondrial transcription termination... 27 8.9
At2g26190.1 68415.m03145 calmodulin-binding family protein conta... 27 8.9
At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote... 27 8.9
>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
subunit family protein similar to Signal recognition
particle receptor alpha subunit (SR-alpha) (Docking
protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
similar to Signal recognition particle receptor alpha
subunit (SR-alpha) (Docking protein alpha) (DP-alpha)
(SP:P06625) [Canis familiaris}; contains Pfam PF04086:
Signal recognition particle, alpha subunit, N-terminal;
contains Pfam PF00448: SRP54-type protein, GTPase domain
Length = 634
Score = 182 bits (443), Expect = 1e-46
Identities = 94/149 (63%), Positives = 113/149 (75%)
Frame = +1
Query: 40 GTREQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 219
G EQLRTH R + ++EKGY KD A +A EAI+ A+ +DVVL+
Sbjct: 470 GAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLV 516
Query: 220 DTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSP 399
DTAGRMQDNEPLMRAL+KLI +N+PD VLFVGEALVGN+AVDQL KFNQ L+D S+S +P
Sbjct: 517 DTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNP 576
Query: 400 HVIDGIVLTKFDTIDDKVGAAISMTYITG 486
+IDGI+LTKFDTIDDKVGAA+SM YI+G
Sbjct: 577 RLIDGILLTKFDTIDDKVGAALSMVYISG 605
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 59.3 bits (137), Expect = 1e-09
Identities = 40/122 (32%), Positives = 61/122 (50%)
Frame = +1
Query: 121 VTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDT 300
V +Y G A IA + ++ A DVV++DTAGR+Q ++ +M L + P
Sbjct: 232 VPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTE 291
Query: 301 VLFVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVLTKFDTIDDKVGAAISMTYI 480
VL V +A+ G EA + FN + I G +LTK D D + GAA+S+ +
Sbjct: 292 VLLVVDAMTGQEAAALVTTFNVEIG----------ITGAILTKLDG-DSRGGAALSVKEV 340
Query: 481 TG 486
+G
Sbjct: 341 SG 342
>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
recognition particle 54 kDa protein 2 (SRP54)
{Arabidopsis thaliana}
Length = 497
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/85 (27%), Positives = 42/85 (49%)
Frame = +1
Query: 121 VTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDT 300
+ Y G D IA+E + D++++DT+GR + L + ++ +PD
Sbjct: 159 IPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDL 218
Query: 301 VLFVGEALVGNEAVDQLVKFNQALA 375
V+FV ++ +G A +Q F Q +A
Sbjct: 219 VIFVMDSSIGQTAFEQARAFKQTVA 243
>At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein
3 / SRP54 (SRP-54C) identical to SP|P49967 Signal
recognition particle 54 kDa protein 3 (SRP54)
{Arabidopsis thaliana}
Length = 495
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA+E + D++++DT+GR + L + ++ +PD V+FV ++ +G
Sbjct: 167 DPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIG 226
Query: 331 NEAVDQLVKFNQALA 375
A DQ F Q++A
Sbjct: 227 QAAFDQAQAFKQSVA 241
>At1g15310.1 68414.m01832 signal recognition particle 54 kDa protein
1 / SRP54 (SRP-54) (SRP-54A) identical to
Swiss-Prot:P37106 signal recognition particle 54 kDa
protein 1 (SRP54) [Arabidopsis thaliana]
Length = 479
Score = 47.6 bits (108), Expect = 4e-06
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +1
Query: 151 DAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVG 330
D IA+E + K D++++DT+GR + L + ++ EPD V+FV ++ +G
Sbjct: 167 DPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIG 226
Query: 331 NEAVDQLVKFNQALA 375
A +Q F + ++
Sbjct: 227 QAAFEQAEAFKETVS 241
>At2g45770.1 68415.m05693 signal recognition particle receptor
protein, chloroplast (FTSY) similar to Cell division
protein ftsY homolog (SP:O67066) {Aquifex aeolicus};
contains Pfam PF00448: SRP54-type protein, GTPase domain
contains TIGRFAM TIGR00064: signal recognition
particle-docking protein FtsY contains Pfam PF02881:
SRP54-type protein, helical bundle domain; identical to
cDNA chloroplast FtsY homolog GI:4583547
Length = 366
Score = 38.3 bits (85), Expect = 0.003
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Frame = +1
Query: 154 AAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLM-------RALAKLIAVNEPDTVLFV 312
AA + +A++ + DVVL DT+GR+ N LM +A+ K+++ P+ +L V
Sbjct: 232 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-GAPNEILLV 290
Query: 313 GEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVLTKFD 435
+ G + Q +FN+ + I G++LTK D
Sbjct: 291 LDGNTGLNMLPQAREFNEVVG----------ITGLILTKLD 321
>At5g63140.1 68418.m07928 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 389
Score = 33.9 bits (74), Expect = 0.058
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 265 LAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSPHV 405
++++IA +PD ++F G+ + G + D L N A A +S P V
Sbjct: 85 MSRVIAAEKPDLIVFTGDNIFGFDVKDALKSINAAFAPAIASKIPWV 131
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 30.3 bits (65), Expect = 0.72
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +1
Query: 172 EAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQL 351
EA +A KTDV D ++DN +R I+ +PDT+ AL G +A D
Sbjct: 261 EANGHAQGVKTDV---DGLQALRDNPEAIRTFQNFISKTDPDTL----AALSGGKAGDMS 313
Query: 352 VKFNQALADYSSSSSPHVIDGIVLT 426
+ + SP I +V T
Sbjct: 314 PDMFKTASSMIGKMSPEEIQKMVQT 338
>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
similar to Deoxyribodipyrimidine photolyase (DNA
photolyase) (Photoreactivating
enzyme)(SP:Q55081){Synechocystis sp.}
Length = 526
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 228 GPNAGQRASDAGPRQAHRGQRTRH 299
GP AG S G R +H G+R+RH
Sbjct: 500 GPMAGGSKSGGGFRGSHSGRRSRH 523
>At3g48460.1 68416.m05290 GDSL-motif lipase/hydrolase family protein
similar to lipase [Arabidopsis thaliana] GI:1145627;
contains InterPro Entry IPR001087 Lipolytic enzyme,
G-D-S-L family
Length = 381
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -2
Query: 296 SGSLT-AMSLARARIRGSLSCIRPAVSMS-TTSVLVSDAYRIASIAMPAASLPY 141
+G LT AMSLA R SL C++ A + S T ++ + + I P+A++ Y
Sbjct: 232 TGCLTLAMSLAAEDDRDSLGCVQSANNQSYTHNLALQSKLKQLRIKYPSATIVY 285
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 461 AAPTLSSIVSNLVSTIPSMTCGLLDEL*SARAWLNLTSWSTASFPTRASPTKSTVSGSLT 282
AA T S +NL+ T+P G+LD++ + WL+ +S P K +S T
Sbjct: 35 AAATAISQNNNLLLTVPRKKTGILDDV-KSNGWLDAMK---SSSPPPTILNKDNLSNDAT 90
Query: 281 AMS 273
M+
Sbjct: 91 DMT 93
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 461 AAPTLSSIVSNLVSTIPSMTCGLLDEL*SARAWLNLTSWSTASFPTRASPTKSTVSGSLT 282
AA T S +NL+ T+P G+LD++ + WL+ +S P K +S T
Sbjct: 35 AAATAISQNNNLLLTVPRKKTGILDDV-KSNGWLDAMK---SSSPPPTILNKDNLSNDAT 90
Query: 281 AMS 273
M+
Sbjct: 91 DMT 93
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 461 AAPTLSSIVSNLVSTIPSMTCGLLDEL*SARAWLNLTSWSTASFPTRASPTKSTVSGSLT 282
AA T S +NL+ T+P G+LD++ + WL+ +S P K +S T
Sbjct: 35 AAATAISQNNNLLLTVPRKKTGILDDV-KSNGWLDAMK---SSSPPPTILNKDNLSNDAT 90
Query: 281 AMS 273
M+
Sbjct: 91 DMT 93
>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 183
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 435 IELGEHYSVDDVRTAGRAVVGEGLVELDQLVDGLVPYESLAHEEHRVGF 289
IE GE Y ++ G+ +V E D+ DG + L H +G+
Sbjct: 98 IEEGEEYLLEKNEMMGKEIVKEAFRLFDENQDGFIDENELKHVLSLLGY 146
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 68 RDTSTRCTRPRATTHDTWSRSTRRDTAKTRP 160
R ++T TRPR H++ + R T +TRP
Sbjct: 193 RRSNTSDTRPRTPIHESAATGRRPQTPETRP 223
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 6.7
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +1
Query: 241 DNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIV 420
DN+PL+ + +L+ +N P+ AL G + LV Q ++ YS+ S VI
Sbjct: 650 DNQPLVPSFTRLMVMNRPEW----KHALYGCLSA-ALVGVLQPVSAYSAGS---VISVFF 701
Query: 421 LTKFDTIDDK 450
LT D I +K
Sbjct: 702 LTSHDQIKEK 711
>At4g14605.1 68417.m02247 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 444
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 387 RAVVGEGLVELDQLVDGLVPYESLAHEEH 301
R +VG L L+ + D L+PY HEEH
Sbjct: 110 RYLVGRELTTLE-IRDSLIPYLEQLHEEH 137
>At2g26190.1 68415.m03145 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 532
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +2
Query: 32 RNSARGSSCARTRDTSTRCTRPRATTHDTWSRSTRRDTAKTRPA*QWKQYDTRLTL 199
RNS G +C R + T T P + T D A T +K Y TR L
Sbjct: 101 RNSLNGRNCERIQITKPTITPPTPFVFFSPRPVTELDAAATTLQKVYKSYRTRRNL 156
>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 220
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 234 NAGQRASDAGPRQAHRGQRTRHGAL 308
N+ ASD P+ R R+RHG++
Sbjct: 115 NSSASASDMQPKNTRRHHRSRHGSI 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,657,297
Number of Sequences: 28952
Number of extensions: 159393
Number of successful extensions: 626
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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