Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0527
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0388 + 28927211-28928467 31 0.94
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 30 1.6
05_03_0334 - 12550621-12550722,12552038-12552226 29 2.2
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 29 2.9
08_02_0999 + 23418295-23418615 25 3.2
04_04_1597 - 34690787-34691302,34691627-34691731 29 3.8
03_02_0849 - 11768191-11771412 29 3.8
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 28 5.0
01_06_0389 - 28932228-28932365,28932967-28934184 28 5.0
10_01_0159 - 1807806-1809386 28 6.7
09_04_0377 + 17086775-17088310 28 6.7
06_01_0380 + 2731792-2732097 28 6.7
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157 27 8.8
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 27 8.8
>01_06_0388 + 28927211-28928467
Length = 418
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 237 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 404
APG S+ V+A G+L E +R Y +G L SL GDV + + G G A
Sbjct: 86 APGGSLADVVARSGGRLDECAIRAYAADVARGLAYLHGMSLVHGDVKGRNVVVGADGRA 144
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +3
Query: 90 VMLVMTSRVSEARSTGAP--LSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVV 263
++LV+ + V + T A L A R++ H A + + + A+ + PGD V++
Sbjct: 116 LILVVNAAVGVWQETNAEKALEALREIQSDHAAVLRDGD--WLPSLPARDLVPGDIVQLR 173
Query: 264 IAGKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHD 425
+ K+P D +R L + T +E G + + + K + V H D
Sbjct: 174 VGDKVPAD-MRVLRL-------VTSTLRVEQGSLTGETASVNKTAHQVPHDDAD 219
>05_03_0334 - 12550621-12550722,12552038-12552226
Length = 96
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 153 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLP-EDTLRGY 302
CR PQ + P P A DSV+VV+ LP E+ LR +
Sbjct: 6 CRIWWPQRRLQPEPLPAPQRFVLFGWLFARTDSVDVVVGAALPQEEILRSF 56
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 126 RSTGAPLSACRDMMPQHNA--TAQTSPPPYTITTDAQSVA 239
R+ P + C + P H+ +A + PPP +I+ A++VA
Sbjct: 18 RNHATPAATCAALAPAHHGHLSASSPPPPSSISAAARAVA 57
>08_02_0999 + 23418295-23418615
Length = 106
Score = 24.6 bits (51), Expect(2) = 3.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 180 ATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKL 278
ATA P T TTD++ APG+S + GK+
Sbjct: 73 ATAVQGSMPMT-TTDSRPTAPGNSPGIGNKGKI 104
Score = 23.0 bits (47), Expect(2) = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 60 KVYACLCAAVVMLVMTSRVSEARSTGAPLSACRD 161
KV C C + ++V+ S +EAR A + D
Sbjct: 5 KVVFCTCILIFIVVVISGQAEARRLAAVANGNED 38
>04_04_1597 - 34690787-34691302,34691627-34691731
Length = 206
Score = 28.7 bits (61), Expect = 3.8
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Frame = +3
Query: 183 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFSLEDGD 362
++ + PPP T TTDA + P + LP+ L G A FS
Sbjct: 116 SSASPPPPTTSTTDAYADLPAGFPFLSDGAFLPQFGLAGVAPAA---------FSW--AS 164
Query: 363 VFSQLINCG----KPGNAVTHKKHDNKEDKRQVRVRWSPP 470
L NCG G AVT DN D + + W PP
Sbjct: 165 AVPDLYNCGIAPWDDGTAVTGAAWDNFADIAGLDLSWPPP 204
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 410 SHCVPRLPAVDELREDVSVLERESPEDVVSLPGLQQI 300
SHC PRL V L +++ LE + + SLPGLQ +
Sbjct: 864 SHC-PRLQNVTNLPRELAKLEINNCGMLCSLPGLQHL 899
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 395 RLPAVDELREDVSVLERESPEDVVSLPGL 309
RL ++ LR D + L + PEDV LPGL
Sbjct: 146 RLTELNYLRLDKNNLSGQIPEDVAKLPGL 174
>01_06_0389 - 28932228-28932365,28932967-28934184
Length = 451
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 237 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 404
APG S+ A G LPE +R Y +G L SL GDV ++ + G G A
Sbjct: 82 APGGSLADEAARNGGCLPEPAIRAYAADVARGLAYLHGNSLVHGDVKARNVVIGSDGRA 140
>10_01_0159 - 1807806-1809386
Length = 526
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 237 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 404
APG S+ V+A G+L E +R Y +G D L + GDV + G G A
Sbjct: 92 APGGSLADVVARNGGRLDEGAVRTYAADVLRGLDYLHGKLVVHGDVKGSNVLVGADGRA 150
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 81 AAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTD 224
A+VV L SRVS + S S R P+ N SP PY D
Sbjct: 9 ASVVHLPGRSRVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSRRD 56
>06_01_0380 + 2731792-2732097
Length = 101
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 295 RKVSSGSLPAITTSTLSPGATLCASVVMV*GGGEVCAVA 179
R ++ L A+ + ++P AT CA V GGE+ A A
Sbjct: 9 RVAAAAVLLALLVAVVAPPATTCADAARVLLGGELAAAA 47
>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
Length = 591
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 237 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 404
APG S+ +A G+L ED +R Y G L + GDV + + G G A
Sbjct: 92 APGGSLADEVARNGGRLEEDDVRAYAADVASGLAYLHGVGMVHGDVKGRNVVIGANGRA 150
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 542 YSDPEDLQCLDDGGAEHDLPGETL 471
Y D ED+ +D G EHD+P + L
Sbjct: 371 YRDEEDVAGVDSGFDEHDIPYDVL 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,870
Number of Sequences: 37544
Number of extensions: 280486
Number of successful extensions: 1287
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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