Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0527
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20550| Best HMM Match : Phosphodiest (HMM E-Value=0)                32   0.32 
SB_34640| Best HMM Match : Phosphodiest (HMM E-Value=1.4e-34)          31   0.55 
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)                 30   1.7  
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              28   5.1  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      28   6.8  
SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_20550| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 579

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +3

Query: 165 MPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTF 344
           +P++    +   PPY    + +S+A  D V+ V++    EDT +       + D      
Sbjct: 168 LPKYREKTRKEYPPYIHCFNNRSIAFKDRVDTVLSWLTSEDTPKFTAFYINEPDGTGHRL 227

Query: 345 SLEDGDVFSQLINCGK 392
            L+ GD   QL+   K
Sbjct: 228 GLDSGDYDRQLVRVDK 243


>SB_34640| Best HMM Match : Phosphodiest (HMM E-Value=1.4e-34)
          Length = 253

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 246 DSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKP 395
           +S EVVIA +   DT+ GYL++  Q   +L   SLE+G     LI    P
Sbjct: 155 ESEEVVIAIR-KVDTITGYLVKQLQKRHLLEKVSLEEGGTLGDLITAILP 203


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 144 LSACRDMMPQHNATAQTSPPP-YTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQ 320
           L  C+   P    TA  +PPP  TI  D  +   GDS  + I+G + ++T   Y   + Q
Sbjct: 4   LETCKARCPAPPTTAPPNPPPALTILFDVNA---GDSYMISISGDVQKETTGSYSCNSSQ 60


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 39  SEEGSIMKVYACLCAAVVMLVMTSRVSE--ARSTGAPLSACRDMMPQHNATAQTSPPPYT 212
           S   SI      L +++  L  TSR S   +RST    S  R   P   +T  T   P T
Sbjct: 175 SRRSSISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPST 234

Query: 213 ITTDAQSVAPGDS 251
           ITT +++ + G +
Sbjct: 235 ITTSSRASSRGSA 247


>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
          Length = 382

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 420 HDNKEDKRQVRVRWSPPQGLTGEVVFRATIVKTL 521
           H NK DK  +R+   PP G+TG+  FR +  + L
Sbjct: 66  HHNKYDKNSMRLNLRPP-GMTGQENFRPSASRNL 98


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 542 YSDPEDLQCLDDGGAEHDLPGETL 471
           Y+D ED++ +DD   +HD+P + L
Sbjct: 406 YNDEEDVKSVDDSFDKHDIPYDVL 429


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 27/101 (26%), Positives = 40/101 (39%)
 Frame = +3

Query: 168 PQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFS 347
           P++   +   PPP T    +Q   PG  VE    G+  +  L  Y  Q    +  LG +S
Sbjct: 632 PEYGGQSMQPPPPKTEGVPSQEYPPGYGVE----GQESQPPLSEYQQQPTIFEQPLGIYS 687

Query: 348 LEDGDVFSQLINCGKPGNAVTHKKHDNKEDKRQVRVRWSPP 470
                  SQ IN G+P      +++       Q +   SPP
Sbjct: 688 ------SSQSINQGQPSQGYNAQRNSATTPPPQ-QAYTSPP 721


>SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 315 RQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHDN 428
           R+G  I+G  + ED ++    +N  K   A +H +H N
Sbjct: 203 RKGPAIIGCMTCEDLELVKYNLNLDKAPKAQSHSQHGN 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,699
Number of Sequences: 59808
Number of extensions: 292305
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)