Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0527
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z77659-2|CAB01165.1|  183|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical p...    28   6.0  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 5/172 (2%)
 Frame = +3

Query: 87  VVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTD-AQSVAPGDSVEVV 263
           +++L+ +    EA+ T  P  A  D  P  N          T + D ++   PG+  +V 
Sbjct: 13  LLLLIFSCNADEAKCTIKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVPGEIYKVS 72

Query: 264 IAG---KLPEDTLRGYLLQARQGDDI-LGTFSLEDGDVFSQLINCGKPGNAVTHKKHDNK 431
           I G   +    T RG+++ +   D+   G++ +  G   +++     PG   +   H N 
Sbjct: 73  IRGWRTQYTVKTFRGFVVSSLFEDNTSAGSWQVVKGHGDARI----SPGCRQSGVSHANL 128

Query: 432 EDKRQVRVRWSPPQGLTGEVVFRATIVKTLKVFWVGVQSAPIKIVS*AATSI 587
           + K  V + W  P+  +G VVFRA++++T  +++   +   +K+     T I
Sbjct: 129 KSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKLCIQKGTQI 180


>Z77659-2|CAB01165.1|  183|Caenorhabditis elegans Hypothetical
           protein F23B12.3 protein.
          Length = 183

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
 Frame = +3

Query: 171 QHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQA-RQGDDILGT-- 341
           +H    Q S PPY I  D +       + + + G       +G+++Q  +  +D LG   
Sbjct: 8   EHQGGLQLSTPPYEIAVDQKCYWRNQPIGLTLQGHNESIWFKGFVIQPFKWNNDQLGERF 67

Query: 342 ---FSLEDGDVFSQLINCGKPGNAVTHKKHDNKEDKRQVRVRWSPPQGLTGEVVFRATIV 512
                L+D   + Q   C +   + TH  HD K  K+ +++ W     +   V F AT+V
Sbjct: 68  GQLVRLDDNGSWQQ--QCFRYQVSATHS-HDEK--KKHIKMWWKVDDEVD-TVQFVATVV 121

Query: 513 KTLKVFWV-GVQSAPI 557
           K    FWV  V+S P+
Sbjct: 122 KHQTQFWVKSVRSRPL 137


>Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3b protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 183 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 299
           T    PPP  IT   Q++    +V  +I GK   + +RG
Sbjct: 171 TDSPKPPPSRITLTLQTLQHAKNVAFIICGKQKAEIVRG 209


>Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3a protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 183 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 299
           T    PPP  IT   Q++    +V  +I GK   + +RG
Sbjct: 183 TDSPKPPPSRITLTLQTLQHAKNVAFIICGKQKAEIVRG 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,319
Number of Sequences: 27780
Number of extensions: 204289
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)