Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0527
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 102  MTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPP 206
            +T   +E   +G P S   D + QH       PPP
Sbjct: 967  VTIITAEEAPSGPPTSIRVDDLDQHTLKVTWKPPP 1001


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 569 GYNFNWSRLYSDPEDLQCLDDGGAEHDLPGETLGRRPAH 453
           G + +W + Y+  E   CL  GG+ +   G+ LG    H
Sbjct: 119 GGDLDW-KYYTTNESHACLSTGGSCYWPRGKNLGGTTLH 156


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 602 NYSGSYRRRCSGYNFNWSRL 543
           NY+ +Y    + YN N+ +L
Sbjct: 93  NYNNNYNNYNNNYNTNYKKL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,101
Number of Sequences: 438
Number of extensions: 2409
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)