Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0527
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39080.1 68415.m04802 expressed protein                             30   1.0  
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    29   1.8  
At4g01290.1 68417.m00170 expressed protein                             29   2.4  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   5.6  
At2g27505.1 68415.m03326 expressed protein ; expression supporte...    28   5.6  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    28   5.6  
At2g20585.2 68415.m02406 expressed protein                             27   9.7  
At2g20585.1 68415.m02405 expressed protein                             27   9.7  

>At2g39080.1 68415.m04802 expressed protein 
          Length = 351

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 602 NYSGSYRRRCSGYNFNWSRLY-SDPEDLQCLDDGGAEHDLPGETLGRRP 459
           +Y+G  R   S +N   S L+ S      C D+G    D P   LG+ P
Sbjct: 161 DYAGEVRNAASNWNGEGSFLFTSSSAPYDCFDNGECNEDSPVVPLGKSP 209


>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +3

Query: 141 PLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLL 308
           P +A     P H       PPP  +  D  +  P D +  +    LP+D     LL
Sbjct: 21  PPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDELRTIFIAGLPDDVKERELL 76


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 93  MLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSV 254
           +L +  R S+ +S    L +  +  P   +   T+PPP   +T A    PG S+
Sbjct: 612 LLSLLQRSSDPKSQDTQLLSATERRPPPPSMKTTTPPPSVKSTTAGEADPGKSL 665


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 327 RLPAGPAANIRARCPLAAYLRSPPPRYRR 241
           R P+ PA   R+  P A   RSP P YRR
Sbjct: 370 RSPSPPARRRRSPSPPARRRRSPSPLYRR 398



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 327 RLPAGPAANIRARCPLAAYLRSPPPRYRR 241
           R P+ PA   R+  PL    RSP P YRR
Sbjct: 380 RSPSPPARRRRSPSPLYRRNRSPSPLYRR 408



 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 327 RLPAGPAANIRARCPLAAYLRSPPPRYRR 241
           R P  PA   R+  P A   RSPPP  RR
Sbjct: 341 RSPTPPARQRRSPSPPARRHRSPPPARRR 369


>At2g27505.1 68415.m03326 expressed protein ; expression supported
           by MPSS
          Length = 282

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -2

Query: 506 GGAEH-DLPGETLGRRPAHPHXXXXXXXXXXXVSHCVPRLPAVDELREDVSVLE--RESP 336
           GG +H D+  +T G   +HP             S  +P+   V +    + +++   E P
Sbjct: 76  GGVQHLDVDAKTCGIIQSHPDIYKSTMCSPSVDS--MPKYVYVSKTVVSLKLVKVGHEDP 133

Query: 335 EDVVSLPGLQQISAQGVLWQ 276
           + VVSLP L+ +  + +L++
Sbjct: 134 KFVVSLPSLKMMHLENILYK 153


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 213  ITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQA 314
            +T+D + +  GDS   +++  +P++TLR  + QA
Sbjct: 3550 LTSDLKQLLSGDSAGQLLSWTVPDETLRASMKQA 3583


>At2g20585.2 68415.m02406 expressed protein
          Length = 100

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 57  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSP 200
           M   A L  A  ML   S  S A STG   S  +   P   ATA+ SP
Sbjct: 1   MATSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSP 48


>At2g20585.1 68415.m02405 expressed protein
          Length = 100

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 57  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSP 200
           M   A L  A  ML   S  S A STG   S  +   P   ATA+ SP
Sbjct: 1   MATSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,271
Number of Sequences: 28952
Number of extensions: 190022
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)