Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0525
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.31
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 2.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 5.1
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 6.7
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 6.7
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 8.9
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 8.9
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 8.9
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 8.9
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 8.9
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 25 8.9
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 29.9 bits (64), Expect = 0.31
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 321 SGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIY 500
SG LL+++L+ K H +G LI V C + E+HSI Y+ +Y
Sbjct: 12 SGSMHALLMSILSK------KSYHPTSYRVGGYRNQLIRVFCVWACIELHSINPWYSGMY 65
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 560 HQTIEISRCVTAYIVFKDLTINCCVCLFDAVDLIVGHSAHYFDEDAFVGTDPDHGLV 390
HQ E+ R + + + C CL D D + HS F+G+ P LV
Sbjct: 171 HQYCEMVRSLLQSMGHSPELVQCITCLPDVADHLTSHSG--IKHITFIGSQPIAKLV 225
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 39 LCNILISCFISKDIGEGKIMFPNQQSRPTV 128
LC + + K G G + PN +S PT+
Sbjct: 1255 LCAMRFFSLLRKSSGIGNLKIPNMKSNPTI 1284
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 369 KFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILEDD 521
K AK++ + +E + E M MS++E+H + +++ + L+DD
Sbjct: 868 KQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDD 918
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 363 LPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIE 479
L F+ E+ M + D+G+ + MC +++ S++
Sbjct: 569 LDDFFTIEIPHMMAVVPHDDGINLSFMCESKVFDLESVD 607
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 55 LVVLFQRTSAKAKSCFLINNRDRLSSL*THSILARML 165
L +F A S INN ++ SL +HS L+ L
Sbjct: 755 LTKIFSEARKNAPSIIFINNVEKWPSLFSHSFLSMFL 791
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 390 HEAMVGIGTDEGVLIEVMCTMSN 458
HEA+ I T+ GVL+E + ++SN
Sbjct: 181 HEALEWIRTEFGVLVEHVFSLSN 203
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 310 LISDIKSFPYNVLNSK 263
+ DIKSFP++++N K
Sbjct: 114 MAKDIKSFPFHIVNDK 129
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 292 SFPYNVLNSKAMRRRCSFERFVSTWIIDFSSVPK-PFMALRRTPASSR 152
S+P N +A R F+R + W+++ S + P L+ P+ S+
Sbjct: 168 SYPRNANLPEAFSRSIEFKRRLEKWLLEHCSETEIPAQQLQALPSLSK 215
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 8.9
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 117 RPTVFPVNPFNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLR-IALEFKTLYGKD 293
RP + N +D + DEKS+ R+ E RLR + + + L K
Sbjct: 120 RPASAVSSSLNSSDDVRSMSDESMESYNDEKSV-NASALRTTEDRLRSMEMAYAQLSAKV 178
Query: 294 LISDIKSETSGKFEDLLIALL 356
+ S K + KF + IA+L
Sbjct: 179 IPSPSKRPANYKFYEQRIAML 199
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 470 VDLIVGHSAHYFDEDAFVGT 411
+DLI G +H DE+AF+ T
Sbjct: 8 IDLIKGIRSHANDEEAFIAT 27
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -2
Query: 479 FDAVDLIVGHSAHYFDEDAFVGTDPDHGLVKFFSVELRQWSEQRN*KVF 333
F+ ++ + ++Y+D F G DP + + ++ E N KVF
Sbjct: 32 FEVMNYALSQGSNYWDAGEFYGVDPPTSNLDLLARYFEKYPENAN-KVF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,270
Number of Sequences: 5004
Number of extensions: 52522
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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