SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0525
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...   168   3e-42
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...   168   3e-42
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...   109   2e-24
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...   109   2e-24
Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical pr...   106   1e-23
U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family...    84   9e-17
Z68219-4|CAA92482.2|  359|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    27   8.2  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      27   8.2  

>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score =  168 bits (408), Expect = 3e-42
 Identities = 81/166 (48%), Positives = 108/166 (65%)
 Frame = +3

Query: 120 PTVFPVNPFNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLI 299
           P+VFPV  FN   DA VLRKAMKG G +   +I +L +R+N QR  I+  FK +YGKDLI
Sbjct: 141 PSVFPVQGFNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGKDLI 200

Query: 300 SDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIE 479
            ++K E  G FEDL++AL+     + AK+LH AM G+GT E VLIE+M + +N +I  + 
Sbjct: 201 KELKGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTSRTNAQIQQVR 260

Query: 480 QAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRA 617
            AY  ++ K LE D+ G+TSG+F RL+ SLC G R E    D  RA
Sbjct: 261 DAYKMLFKKDLERDLIGETSGHFKRLLVSLCAGGRDESSQTDGLRA 306



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
 Frame = +3

Query: 168 VLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLI 347
           +L+   K  GTDE +   +L  ++  Q   +  E++      +   I+ E SG   D L+
Sbjct: 313 LLQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGDIRDGLL 372

Query: 348 ALLTPL---PKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILED 518
           A++  +   P ++AK LH++M G+GT +  LI +  T + Y++  I   + ++Y   LE+
Sbjct: 373 AVIAVIRNRPAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRTSLEN 432

Query: 519 DIRGDTSGNFNRLMTSLCVGNR 584
            I+GD SG +   + +L  GNR
Sbjct: 433 MIKGDCSGAYKEGLIALVNGNR 454



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/69 (33%), Positives = 38/69 (55%)
 Frame = +3

Query: 150 PREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGK 329
           P   A +L  +MKG GT +  +I++   R+      I   F++LY   L + IK + SG 
Sbjct: 382 PAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRTSLENMIKGDCSGA 441

Query: 330 FEDLLIALL 356
           +++ LIAL+
Sbjct: 442 YKEGLIALV 450


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score =  168 bits (408), Expect = 3e-42
 Identities = 81/166 (48%), Positives = 108/166 (65%)
 Frame = +3

Query: 120 PTVFPVNPFNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLI 299
           P+VFPV  FN   DA VLRKAMKG G +   +I +L +R+N QR  I+  FK +YGKDLI
Sbjct: 183 PSVFPVQGFNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGKDLI 242

Query: 300 SDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIE 479
            ++K E  G FEDL++AL+     + AK+LH AM G+GT E VLIE+M + +N +I  + 
Sbjct: 243 KELKGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTSRTNAQIQQVR 302

Query: 480 QAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRA 617
            AY  ++ K LE D+ G+TSG+F RL+ SLC G R E    D  RA
Sbjct: 303 DAYKMLFKKDLERDLIGETSGHFKRLLVSLCAGGRDESSQTDGLRA 348



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
 Frame = +3

Query: 168 VLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLI 347
           +L+   K  GTDE +   +L  ++  Q   +  E++      +   I+ E SG   D L+
Sbjct: 355 LLQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGDIRDGLL 414

Query: 348 ALLTPL---PKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILED 518
           A++  +   P ++AK LH++M G+GT +  LI +  T + Y++  I   + ++Y   LE+
Sbjct: 415 AVIAVIRNRPAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRTSLEN 474

Query: 519 DIRGDTSGNFNRLMTSLCVGNR 584
            I+GD SG +   + +L  GNR
Sbjct: 475 MIKGDCSGAYKEGLIALVNGNR 496



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/69 (33%), Positives = 38/69 (55%)
 Frame = +3

Query: 150 PREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGK 329
           P   A +L  +MKG GT +  +I++   R+      I   F++LY   L + IK + SG 
Sbjct: 424 PAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRTSLENMIKGDCSGA 483

Query: 330 FEDLLIALL 356
           +++ LIAL+
Sbjct: 484 YKEGLIALV 492


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score =  109 bits (261), Expect = 2e-24
 Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
 Frame = +3

Query: 123 TVFPVNPFNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLIS 302
           T+     FN    A  + +A++    D  +++ V+T  SN QR ++   +K  YGKD+I 
Sbjct: 7   TIVDAREFNAPMFAEKIDRALRAGEKD--AVVNVITSISNAQRQQLREPYKLKYGKDIIQ 64

Query: 303 DIKSETSGKFEDLLIALL-TPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIE 479
            +  + SG  E  + AL+ TPL  +  K+L  AM G+GTDE VLIE++C+ +  ++ +I 
Sbjct: 65  ALDKKFSGDLEKAIFALMETPLD-YDVKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIR 123

Query: 480 QAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARD 623
             Y   YGK LE DI GDTSG F  L+ SL  G++      +  +A+D
Sbjct: 124 VTYEKEYGKALEADIAGDTSGEFRDLLVSLVTGSKDGSHDTNDAQAKD 171



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
 Frame = +3

Query: 201 DEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLIALL---TPLPK 371
           D    + +L  ++  Q  ++   F+ L G  +   I+ E SG  +   + ++   +   K
Sbjct: 188 DGTHFLHILATQNQYQLRKVFAYFQELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQK 247

Query: 372 FYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILEDDIRGDTSGNFN 551
           F+A++LH +M G+GT +  LI V+ T S  ++  I+  +  +Y K L D ++GDTSG + 
Sbjct: 248 FFAQQLHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYR 307

Query: 552 RLMTSLCVGNRS 587
             + S+  GN +
Sbjct: 308 DALLSIINGNHA 319



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +3

Query: 171 LRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLIA 350
           L  +MKG GT +  +I+V+  RS      I  EF+ LY K L   +K +TSG + D L++
Sbjct: 253 LHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLS 312

Query: 351 LL 356
           ++
Sbjct: 313 II 314


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score =  109 bits (261), Expect = 2e-24
 Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
 Frame = +3

Query: 123 TVFPVNPFNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLIS 302
           T+     FN    A  + +A++    D  +++ V+T  SN QR ++   +K  YGKD+I 
Sbjct: 7   TIVDAREFNAPMFAEKIDRALRAGEKD--AVVNVITSISNAQRQQLREPYKLKYGKDIIQ 64

Query: 303 DIKSETSGKFEDLLIALL-TPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIE 479
            +  + SG  E  + AL+ TPL  +  K+L  AM G+GTDE VLIE++C+ +  ++ +I 
Sbjct: 65  ALDKKFSGDLEKAIFALMETPLD-YDVKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIR 123

Query: 480 QAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARD 623
             Y   YGK LE DI GDTSG F  L+ SL  G++      +  +A+D
Sbjct: 124 VTYEKEYGKALEADIAGDTSGEFRDLLVSLVTGSKDGSHDTNDAQAKD 171



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
 Frame = +3

Query: 201 DEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLIALL---TPLPK 371
           D    + +L  ++  Q  ++   F+ L G  +   I+ E SG  +   + ++   +   K
Sbjct: 188 DGTHFLHILATQNQYQLRKVFAYFQELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQK 247

Query: 372 FYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILEDDIRGDTSGNFN 551
           F+A++LH +M G+GT +  LI V+ T S  ++  I+  +  +Y K L D ++GDTSG + 
Sbjct: 248 FFAQQLHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYR 307

Query: 552 RLMTSLCVGNRS 587
             + S+  GN +
Sbjct: 308 DALLSIINGNHA 319



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +3

Query: 171 LRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLIA 350
           L  +MKG GT +  +I+V+  RS      I  EF+ LY K L   +K +TSG + D L++
Sbjct: 253 LHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLS 312

Query: 351 LL 356
           ++
Sbjct: 313 II 314


>Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical
           protein C28A5.3 protein.
          Length = 317

 Score =  106 bits (254), Expect = 1e-23
 Identities = 57/140 (40%), Positives = 81/140 (57%)
 Frame = +3

Query: 171 LRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLIA 350
           L KA++    ++  I+++L   +N QR  I   +KT YGKDL  +IK   SG FED L+A
Sbjct: 21  LEKALRN--KEKLKILEILVSVNNTQRQMIRTPYKTRYGKDLEDEIKKAFSGDFEDFLVA 78

Query: 351 LLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILEDDIRG 530
           LL    K    EL+ ++ G+GT+E  LIE++ T +N EI + +  Y   Y K LED I  
Sbjct: 79  LLQTPTKLDVTELNRSVKGLGTNEKNLIEILTTRTNEEIEAAKNTYFMTYSKSLEDAISA 138

Query: 531 DTSGNFNRLMTSLCVGNRSE 590
           DTSG+F RL+  +    R E
Sbjct: 139 DTSGDFRRLLIVILQAKREE 158



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
 Frame = +3

Query: 162 AGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDL 341
           A +L+   K  G ++    ++    +     ++  E +   GK+    I  E SG F++L
Sbjct: 172 AQILKSFDKKSGVEKFDAFKIFATCNGAHIQKVIEEVERQSGKEFQKLIDKELSGDFKNL 231

Query: 342 LIALLTPL---PKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKIL 512
           +++L+      P+++A  +H A  G+GT +  LI ++ + S  ++  IE  +  ++GK L
Sbjct: 232 VLSLIETSRNKPRYFANSIHLATKGMGTRDKDLIRILVSRSENDLVIIEHEFQTLFGKPL 291

Query: 513 EDDIRGDTSGNFNRLMTSLCVGN 581
              I+ +    +   +T L  GN
Sbjct: 292 TQLIKEECKAEYRDGLTMLVKGN 314



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
 Frame = +3

Query: 159 DAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFED 338
           D   L +++KG GT+EK++I++LT R+NE+       +   Y K L   I ++TSG F  
Sbjct: 87  DVTELNRSVKGLGTNEKNLIEILTTRTNEEIEAAKNTYFMTYSKSLEDAISADTSGDFRR 146

Query: 339 LLIALLTP------LPKFYAKELHEAMV------GIGTDEGVLIEVMCTMSNYEIHSIEQ 482
           LLI +L            +    H A +        G ++    ++  T +   I  + +
Sbjct: 147 LLIVILQAKREEGGFADTFKVGPHAAQILKSFDKKSGVEKFDAFKIFATCNGAHIQKVIE 206

Query: 483 AYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSE 590
                 GK  +  I  + SG+F  L+ SL   +R++
Sbjct: 207 EVERQSGKEFQKLIDKELSGDFKNLVLSLIETSRNK 242



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/74 (37%), Positives = 40/74 (54%)
 Frame = +3

Query: 150 PREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGK 329
           PR  A  +  A KG GT +K +I++L  RS    + I  EF+TL+GK L   IK E   +
Sbjct: 243 PRYFANSIHLATKGMGTRDKDLIRILVSRSENDLVIIEHEFQTLFGKPLTQLIKEECKAE 302

Query: 330 FEDLLIALLTPLPK 371
           + D L  L+   P+
Sbjct: 303 YRDGLTMLVKGNPR 316


>U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family
           protein 4 protein.
          Length = 351

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
 Frame = +3

Query: 117 RPTVF-PVNP-FNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGK 290
           R T++ P +P F+P + +  LR ++ G  T +++II  +   +N QR +I   ++ +Y +
Sbjct: 14  RGTIYGPSSPDFHPVQASETLRSSLHGLETKDQTIINTVLYHNNFQRQKILGAYEDMYSR 73

Query: 291 DLISDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIH 470
            L+ D++ E  G F ++  AL  P P + A+ +++++     D  V IE+ CT S  ++ 
Sbjct: 74  KLLEDLEEECGGFFFEMCQALFKPAPNYDAQCVYKSLSNRHGDRSVAIEIACTRSPRQMR 133

Query: 471 SIEQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQN 611
           ++   Y   Y K L+ D+     G   ++M  L   NR E   V  N
Sbjct: 134 ALRDTYQIDYRKSLDKDLTVKVEGVVGKMMHLLLCNNREEGLGVRVN 180



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 171 LRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKDLISDIKSETSGKFEDLLIA 350
           LR AM     D+ +II++   RS      I+LE+K  Y + L  DI   TSG++  ++  
Sbjct: 271 LRTAMTAERVDQSTIIRICVSRSEIDLQDISLEYKRKYQRPLEHDICQSTSGEYTRMICT 330

Query: 351 LLT 359
           LL+
Sbjct: 331 LLS 333


>Z68219-4|CAA92482.2|  359|Caenorhabditis elegans Hypothetical
           protein T05A1.5a protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +3

Query: 114 SRPTVFPVNPFNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEFKTLYGKD 293
           S PT    +     E+   L+K   G  +DE+ + + + K    ++L            +
Sbjct: 5   SLPTSLVTDTLLEDEEYDFLKKGSSGKLSDEELLARTIEKALKTKKLA--------QSPN 56

Query: 294 LISDIKSETSGKFEDLL--IALLTPLPKF 374
           + S IK ETS K EDLL  I +  P P F
Sbjct: 57  MTSSIKVETSIKVEDLLDQIGIWHPYPLF 85


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 137 YREDSRSRLLIRKHDFAFAD 78
           Y  D  SR++IR+H+F+F D
Sbjct: 696 YVGDRESRMVIREHEFSFVD 715


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 137 YREDSRSRLLIRKHDFAFAD 78
           Y  D  SR++IR+H+F+F D
Sbjct: 696 YVGDRESRMVIREHEFSFVD 715


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 375 YAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIEQAYTAIYGKILEDDIRGDTSGNFNR 554
           YAK +HE +   G D+    +            + + Y +I G  +  D RG++ GNF+ 
Sbjct: 462 YAKAIHELVEEYGNDDSY--DPTADGKAIIDRIVNKKYRSIQGFDMRIDERGNSKGNFSL 519

Query: 555 L 557
           L
Sbjct: 520 L 520


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 137 YREDSRSRLLIRKHDFAFAD 78
           Y  D  SR++IR+H+F+F D
Sbjct: 696 YVGDRESRMVIREHEFSFVD 715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,223
Number of Sequences: 27780
Number of extensions: 287951
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -