Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0525
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.79 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 349 RCSLHCRSSTLKNFTRPWSGSVPTK 423
           RCS+ C +++   +   W  S+PTK
Sbjct: 18  RCSVRCSAASGLRWFEIWRDSLPTK 42


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -2

Query: 605 IDREIFRSISHAKGCHQTIEISRCVTAYIVFKDLTINCCVCLFDAVD 465
           IDR+ F++I    G  +  E +  + +  +FK+L     + + D ++
Sbjct: 191 IDRQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEETLIKISDVLE 237


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 346 IKRSSNFPLVSLLISDI 296
           ++R  N+ LVSL +SD+
Sbjct: 72  LRRPCNYLLVSLAVSDL 88


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 617 CPILIDREIFRSISH 573
           CP  +D  I+ +ISH
Sbjct: 562 CPYTVDAAIYGNISH 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,621
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)