Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0524
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0M5M2 Cluster: POT family amino acid/peptide transport...    34   3.4  
UniRef50_Q8EXX7 Cluster: Putative uncharacterized protein; n=2; ...    33   4.5  

>UniRef50_A0M5M2 Cluster: POT family amino acid/peptide transporter;
           n=3; Bacteroidetes|Rep: POT family amino acid/peptide
           transporter - Gramella forsetii (strain KT0803)
          Length = 595

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 376 TGFNWQIIIHSVLIIIKTPSMAQRNNTTFFLGKGELVL 263
           TG+ W +II + ++ +   SMA    T+ +LG G LV+
Sbjct: 95  TGYRWAVIIGAAIMTLGHASMALETETSLYLGLGLLVI 132


>UniRef50_Q8EXX7 Cluster: Putative uncharacterized protein; n=2;
           Leptospira interrogans|Rep: Putative uncharacterized
           protein - Leptospira interrogans
          Length = 643

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -1

Query: 289 FLGKGELVLTFSCQINFTRVNKRLIFNKKKSVFLNNKIGLEKVKSMD*RSNSYSWDRLLL 110
           FLG   +V  F   + F    K L FN +K +++ +K+G  K K  + +    SWD+LL 
Sbjct: 334 FLGTCLIVSVFFQSVFFELRFKNLNFNIQKLLYIFSKLGFNKSKIENWK--GLSWDKLLF 391

Query: 109 SFNM 98
            F +
Sbjct: 392 VFTL 395


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,148,466
Number of Sequences: 1657284
Number of extensions: 12180851
Number of successful extensions: 24247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24246
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)