Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0524
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   2.3  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    27   2.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.5  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.5  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 315 ILGVFIMINTE*IIICQ-LNPVAGDILLACTNWNLFLLQYSDLESKRAIYYSLTL 476
           +L  F   N E +  CQ +N VA  +L+ CT    F L +   E     YYS T+
Sbjct: 291 VLVAFSWKNQE-VGYCQAMNIVAAALLIHCTEEQTFFLMHKICEDYIPGYYSKTM 344


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +1

Query: 439 WRARGPYTILSLCLNINDGYPFVMSTNSSYHLTSAEIVSVSIVGTKETICDQTFISTYLN 618
           W++  P   L +   + D Y      N +    + E+VS+     KE   ++TF+ T+LN
Sbjct: 309 WKSEHPEEFLKIIHKVEDFY-----RNGTLKTVNTELVSL-----KEDADEKTFLDTFLN 358

Query: 619 *VNRYNLKFV 648
            +  +  K +
Sbjct: 359 AIEGHGKKII 368


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
 Frame = -1

Query: 316  MAQRNNTTFFLGKGELVLTFSCQINFTRV---NKRLIFNKKKSVFLNNKIGLEKVKSMD* 146
            MA R  +    G   LV  F    +FTRV   N +++ N  +  +LN    L  + S D 
Sbjct: 1411 MALRGYSRLQFGPS-LVKDFVADTSFTRVQSINPKILLNIYEKSWLNIAESLTILLSTDA 1469

Query: 145  RS--NSYSWDRLLLSF-------NMNFSPRCFPSAMTCLNVCLQTRLVESTL 17
                   S D L LS        N+N++   +       +VC Q+ L+ STL
Sbjct: 1470 NLIYGILSGDELSLSEEDVFFQDNINYASNRYSFNFFLFSVCFQSLLIPSTL 1521


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 412  IYFCYNILIWRARGPYTILSLCLNINDGY 498
            + FCYN+  +  +   T+ +L    NDGY
Sbjct: 1832 LIFCYNVYEFVVKEKETVAALKQQENDGY 1860


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 448 RGPYTILSLCLNINDGYPFVMSTNSSYHLT 537
           R P+ +  L   I   +P++ S NS+Y  T
Sbjct: 153 RHPHRLKMLPFGIQSAHPYISSLNSNYPTT 182


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 454 PYTILSLCLNINDGYPFVMSTNSS---YHLTSAEIVSVSIVGTKETI 585
           P ++LS  LN++D  PF+ +  +    Y     +I +    G  ETI
Sbjct: 609 PLSMLSKSLNLDDKLPFLSNNENDKYVYEFDPFKIANCRASGLNETI 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,335
Number of Sequences: 5004
Number of extensions: 54029
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)