Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0524
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544...    31   0.60 

>02_01_0726 +
           5440341-5440661,5441574-5441620,5442917-5442977,
           5442978-5443035,5443303-5443463,5443692-5443808,
           5443888-5443989,5444834-5444908,5444996-5445084,
           5445171-5445220,5445562-5445641,5445744-5445953,
           5446103-5446170,5446363-5446423,5446719-5447081
          Length = 620

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
 Frame = +1

Query: 457 YTILSLCLNINDGYP--FVMSTNSSYH----LTSAEIVSVSIVGTK 576
           + I+ L LNIN GYP  F  ++N+ +H    L+   ++ + IVGTK
Sbjct: 350 FVIVFLLLNINGGYPLNFSFASNAGWHTYFWLSFLPLILLLIVGTK 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,393
Number of Sequences: 37544
Number of extensions: 314888
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)