Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0524
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41208| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_18062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  

>SB_41208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 457 YTILSLCLNI-NDGYPFVMSTNSSYHLTSAEIVSVSIVGTKETICDQTFIST 609
           Y  L  C  + N  YP  +ST+   HL+  ++  +++   K+++ D T+I T
Sbjct: 9   YQPLKSCTPLTNSCYPIYLSTHPQTHLSKRQLNVLTLTPLKKSLVDLTWIRT 60


>SB_18062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 457 YTILSLCLNI-NDGYPFVMSTNSSYHLTSAEIVSVSIVGTKETICDQTFIST 609
           Y  L  C  + N  YP  +ST+   HL+  ++  +++   K+++ D T+I T
Sbjct: 9   YQPLKPCTPLTNSCYPIHLSTHPQNHLSKRQLNVLTLTPLKKSLVDLTWIRT 60


>SB_12407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 487 NDGYPFVMSTNSSYHLTSAEIVSVSIVGTKETICDQTFIST 609
           N  YP  +ST+   HL+  ++  +++   K+++ D T+I T
Sbjct: 20  NSCYPIHLSTHPQTHLSKRQLNVLTLTPLKKSLVDLTWIRT 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,817,937
Number of Sequences: 59808
Number of extensions: 371528
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)