Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0524
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family pr...    29   3.5  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    27   8.2  

>At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 129

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 362 ANYNSLRINHNKNS*YGTTK*HHVFFRQRRT 270
           A +N++ ++ NKN+ YGT+K  H F + + T
Sbjct: 86  ARHNNIEVD-NKNTIYGTSKIEHPFSKNKNT 115


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 478  GRVRE*YMALLLSRSEYCSRNRFQLVQANSISPATGFNWQIIIHSVLIIIKTPSMAQRNN 299
            GRV E  +AL     +Y       + + ++     G +W I++  VL+++K  SM +R  
Sbjct: 1741 GRVLEILLALRFLLYQYGIVYHLNIARRHTTFLVYGLSWAILLS-VLLVLKMVSMGRRKF 1799

Query: 298  TTFF 287
             T F
Sbjct: 1800 GTDF 1803


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,442
Number of Sequences: 28952
Number of extensions: 267855
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)