Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0523
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    28   1.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +2

Query: 200 RESLRDKFKEIKI-----LTLASQYIFENLLYVRKNIVEFPRVCDLHNVNTRNKHRLALP 364
           RE + DKFK+IKI         S  I+  +L VR  I+E    CDL   +T +  R  L 
Sbjct: 169 RELIGDKFKDIKIGFFLHTPFPSSEIY-RVLPVRNEILEGVLNCDLVGFHTYDYARHFLS 227

Query: 365 A-ARIKKISNSFRGL 406
           A +RI  +S    G+
Sbjct: 228 ACSRILNLSTLPNGV 242


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 416 LFNKIPQNVQLLPVHRFKKTVKERLCNKAY 505
           +FN +P +     +H  K T+  RLC K++
Sbjct: 520 VFNDVPYSEIDSQLHTIKSTIAARLCGKSH 549


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 246 KVRILISLNLSLKDSLVCIL*IARIALFCRMKIVSTSAAL 127
           K ++ ++ ++SL+++ VC   + R  L C+ ++  T AAL
Sbjct: 130 KQKLEVNSSVSLENTNVCKASLYRFMLMCKNELGLTDAAL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,046
Number of Sequences: 5004
Number of extensions: 54388
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)