Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0523
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243...    30   2.0  
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314...    28   6.0  

>11_06_0760 +
           27017956-27018433,27018487-27019234,27023760-27024378,
           27030755-27032440
          Length = 1176

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 404 LGVQLFNKIPQ-NVQLLPVHRFKKTVKERLCNKAYYKVKDFLLDGTTWE 547
           + +Q  NK  + N+Q +      K ++E L  K Y+ + D +   TTWE
Sbjct: 376 INIQTMNKPGEKNIQTMKRDGLSKLLQEHLNQKRYFLLIDDVWSATTWE 424


>06_01_0446 -
           3147007-3147111,3147215-3147367,3147445-3147497,
           3147670-3147988,3148754-3148892,3149141-3149222,
           3149711-3149789,3150135-3150314,3150811-3151070,
           3151192-3151294,3151469-3151609,3151797-3151870,
           3153536-3153635,3154108-3154167,3154381-3154428,
           3154519-3154610,3155023-3155071,3155810-3155879,
           3156408-3156505,3157288-3157347
          Length = 754

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +2

Query: 134 ADVETIFILQKRAIRAIYNMHTRESLRDKFKEIKILTLASQYIFENLLYVRKNIVEFPRV 313
           AD+E I +  K A RA+Y++H + S R+  K++  L   +    E L  +R N+   PR 
Sbjct: 113 ADMEFISMGMKVATRAVYSLH-KTSTREHIKKV-ALRNCNAISAEVLCELRYNL---PRT 167

Query: 314 CDLHNVN 334
              H  N
Sbjct: 168 YKFHKQN 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,749
Number of Sequences: 37544
Number of extensions: 324101
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)