Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0523
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-4|AAM98024.1|  484|Caenorhabditis elegans Temporarily ass...    28   7.2  
U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily ass...    28   7.2  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    28   7.2  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    28   7.2  
Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81538-1|CAB04383.1|  569|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U28941-4|AAM98024.1|  484|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform c protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 184 NSTNSPLLQDENRFD-IGSIAPQQNAIGHN 98
           N   SP  +D  +F+ I SIAP+++A GH+
Sbjct: 162 NMDLSPTSRDSTQFEQIPSIAPEESAFGHD 191


>U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform d protein.
          Length = 799

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 184 NSTNSPLLQDENRFD-IGSIAPQQNAIGHN 98
           N   SP  +D  +F+ I SIAP+++A GH+
Sbjct: 162 NMDLSPTSRDSTQFEQIPSIAPEESAFGHD 191


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 184 NSTNSPLLQDENRFD-IGSIAPQQNAIGHN 98
           N   SP  +D  +F+ I SIAP+++A GH+
Sbjct: 162 NMDLSPTSRDSTQFEQIPSIAPEESAFGHD 191


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 184 NSTNSPLLQDENRFD-IGSIAPQQNAIGHN 98
           N   SP  +D  +F+ I SIAP+++A GH+
Sbjct: 162 NMDLSPTSRDSTQFEQIPSIAPEESAFGHD 191


>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 408 PSPLKELLIFLIRAAGNASLCLFLVFTLCKSQTLGN 301
           P P +E  IF +      +  +FLV+ L  S T GN
Sbjct: 187 PCPTREFFIFPVCVFEGTTSHIFLVYALVMSHTSGN 222


>Z81538-1|CAB04383.1|  569|Caenorhabditis elegans Hypothetical
           protein F45H10.1 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 90  FIVLC---PMAFCCGAMLPMSKRFSS 158
           FI+LC   P+ FC   + PM KRF S
Sbjct: 533 FILLCCFPPVFFCFSQLFPMLKRFPS 558


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 408 PSPLKELLIFLIRAAGNASLCLFLVFTLCKSQTLGN 301
           P P +E  IF +      +  +FLV+ L  S T GN
Sbjct: 187 PCPTREFFIFPVCVFEGTTSHIFLVYALVMSHTSGN 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,633
Number of Sequences: 27780
Number of extensions: 310714
Number of successful extensions: 771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)