Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0523
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At3g51730.1 68416.m05672 saposin B domain-containing protein con...    28   6.7  
At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR cla...    27   8.8  
At1g52910.1 68414.m05983 expressed protein                             27   8.8  

>At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535: PPR repeat
          Length = 880

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 441 TFCGILLKSCTPSPLKELLIFLIRAAGNAS-LCLFLVFTLCK 319
           T   I L+   P  + EL+  + +  G  S LC+FLV  LCK
Sbjct: 710 TVSDIALRETDPECINELISVVEQLGGCISGLCIFLVTRLCK 751


>At3g51730.1 68416.m05672 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 213

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 236 ILTLASQYIFENLLYVRKNIVEFPRVCDLHN 328
           + TL  +Y+ + L Y+ KN+ +   + DLH+
Sbjct: 39  VCTLCEEYVTDALSYLEKNVTQAEIIEDLHD 69


>At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 985

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +2

Query: 182 IYNMHTRESLRDKFKEIKILTLASQYIFENLLYVRKNIVEFPRVCD-----LHNVNTRNK 346
           ++++H+   LRD FK +K+ +L +    E L     +I+EFPR  +      H   +R  
Sbjct: 573 LFSLHSL-FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTL 631

Query: 347 HRLALPAARIKKISN 391
           H  ++PA  + ++S+
Sbjct: 632 HLESIPARVVSRLSS 646


>At1g52910.1 68414.m05983 expressed protein
          Length = 175

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 75  FISVIFIVLCPMAFCCG-AMLPMSKRFSSCRRGLFVLFIIC 194
           FIS + I++    FCCG A+ P   R  +C  G+ +LF+IC
Sbjct: 63  FISQVIIMVASRCFCCGKALKPGGSR--AC--GI-MLFLIC 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,326,870
Number of Sequences: 28952
Number of extensions: 273966
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)