Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0521
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    34   0.022
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    28   1.5  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   7.8  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   7.8  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 162 PVT*KLRSARLGWYGHVMRRNENEVVKRVLTMNVEGFRG---RGRPKKKWMDCVK 317
           P+T  L+S  LG +G  +++NE  + K  + + +EG R    R   +K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 198 WYGHVMRRNENEVVKRVLTMNVEGFRG-RGRPKKK 299
           W  HV+R    E+ KR +  N++ +RG  G+ KKK
Sbjct: 60  WKDHVLRDFGLELQKRTILNNIDDWRGLYGKLKKK 94


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 664 NVCRYTVVKLI*KAQLINSYILIALLASSPTTDDNENSYHF 542
           N+CR T + +   +Q +   I   L  SSP +DD E  Y+F
Sbjct: 369 NICRSTRLYIPLSSQFLEM-IPFVLRRSSPLSDDKEVMYNF 408


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 88  NIRISAACNRLSTPFIA 38
           ++ +SAACN +S P IA
Sbjct: 150 SVNVSAACNNVSAPLIA 166


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = -1

Query: 280 LPLNPSTFIVNTLLTTSFSFRLITCPYHPKRALLSFYVTGATFRLPLTYSFRILSILVTP 101
           LP+ PS+++ NT L +S      +       +    Y T + F  P+T S   LS   T 
Sbjct: 481 LPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITIS-TSLSSFPTT 539

Query: 100 HIHRNIRISAACNRLST 50
            +  + + S+  + ++T
Sbjct: 540 IVSSSFQYSSLSSNVTT 556


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 228 FHFVSSHVHTIPNAHSSVSMSQVPLLDFL*HTHSVFYPFSLLHTSIATFASLLHAIAFQL 49
           FH  S   H+I  A S V    +P L  L +  ++F   SL+    A    +L  I    
Sbjct: 155 FHLTSIFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSLVEK--AYLFDVLSKIYVAT 212

Query: 48  LSSPFQLHTY 19
            SSP  + +Y
Sbjct: 213 DSSPVDVQSY 222


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 444 SWNNAPSGKHTVLSTQ 491
           SWNN PSG +T LST+
Sbjct: 522 SWNNVPSGDNT-LSTE 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,777
Number of Sequences: 5004
Number of extensions: 66785
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)