Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0521
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1039 - 8200922-8201553,8201652-8201784 33 0.16
04_04_0398 + 24933894-24933916,24934015-24934555 32 0.37
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 30 2.0
06_03_1477 + 30408296-30409123,30409227-30410264 29 2.6
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 29 3.5
04_02_0016 + 8557023-8557176,8557277-8557908 29 4.6
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 29 4.6
05_03_0677 - 16863260-16863778 28 6.0
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 8.0
03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118 28 8.0
02_03_0360 + 18104948-18106159 28 8.0
>01_01_1039 - 8200922-8201553,8201652-8201784
Length = 254
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +1
Query: 334 GE*AKKWYMIEE--YGRSKHVAPTPGDCGKGRIMMMTYGVGTTPLAANIRY*AHRECYRC 507
GE A++W YG S G CG G + YG TT L++ + Y C C
Sbjct: 21 GEAAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSAL-YGDGASCGAC 79
Query: 508 YRV--DLPLQMWNEN 546
Y V D W +N
Sbjct: 80 YLVTCDASATRWCKN 94
>04_04_0398 + 24933894-24933916,24934015-24934555
Length = 187
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 288 PKKKWMDCVKDDMGRRGVSEE-MVYDRRVWKE 380
PKKK+ CV+D+ G + ++E+ MV +W+E
Sbjct: 19 PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/93 (30%), Positives = 41/93 (44%)
Frame = -1
Query: 304 IHFFLGLPLPLNPSTFIVNTLLTTSFSFRLITCPYHPKRALLSFYVTGATFRLPLTYSFR 125
+H L LP P+ P+T I T+ T+ LI A SF + P + S
Sbjct: 187 VHPTLHLPAPVQPTTQIAGTV-TSQPQQSLIPSGATSSSAFPSFSTPASA---PSSSS-- 240
Query: 124 ILSILVTPHIHRNIRISAACNRLSTPFIAFPTP 26
+ S TP + N+ ++ +LSTPF TP
Sbjct: 241 LFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTP 273
>06_03_1477 + 30408296-30409123,30409227-30410264
Length = 621
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -1
Query: 649 TVVKLI*--KAQLINSYILI-ALLASSPTTDDNENSYHFHSTFVVVNQRGNIGNTLCVLS 479
T++KL+ KA +++ + I LLAS+PT + HF V + + G N C +S
Sbjct: 511 TLLKLLDDKKAAMVDEALSIFLLLASNPTCRGEVGTEHFVEKLVQIIKEGTPKNKECAVS 570
Query: 478 TVCLPLGA 455
V L LG+
Sbjct: 571 -VLLELGS 577
>01_06_0561 +
30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 321 DMGRRGVSEEM-VYDRRVWKEQTCCADPR*LWEGQDNDDDVWSWN 452
D+ R V EM ++RRVW ADP L G D D V WN
Sbjct: 579 DVTRSQVFVEMREHERRVWSVDFSLADPTKLVSGSD-DGSVKLWN 622
>04_02_0016 + 8557023-8557176,8557277-8557908
Length = 261
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 370 YGRSKHVAPTPGDCGKGRIMMMTYGVGTTPLAANIRY*AHRECYRCYRV 516
YG S G CG G + YG T L + + + C +CYR+
Sbjct: 42 YGGSDASGTMGGACGYGDLYSTGYGTNTAAL-STVLFNDGASCGQCYRI 89
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -2
Query: 183 SSVSMSQVPLLDF-L*HTHSVFYP-----FSLLHTSIATFASLLHAIAFQLLSSPFQLHT 22
SS S + L F + H H+ F+P SLL S + LH I LL +P +HT
Sbjct: 104 SSSSSTTFRLFRFAMRHAHAAFHPNIASLLSLLRASSSYSDHFLHMIHAYLLKTPASIHT 163
>05_03_0677 - 16863260-16863778
Length = 172
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 27 GVGKAMKGVERRLHAAEMRMLRWMCGVTRMDRIRNEYVRGSLKVA 161
G G+ +G R R+LR + + R+R+ YVRG L++A
Sbjct: 51 GAGRWRRGWRVRRRGLGRRILRALSPRRLLARLRDAYVRGMLRLA 95
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 516 NAVTSVTLSVCLVPYVC 466
N V+S +LSVCL P VC
Sbjct: 632 NPVSSTSLSVCLAPLVC 648
>03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118
Length = 258
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 370 YGRSKHVAPTPGDCGKGRIMMMTYGVGTTPLAANIRY*AHRECYRCYRV 516
YG S G CG G + YG T L++ + + C +CY++
Sbjct: 38 YGGSDASGTMGGACGYGNLYWSGYGTNTAALSSAL-FNDGASCGQCYQI 85
>02_03_0360 + 18104948-18106159
Length = 403
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 30 VGKAMKGVERRLHAAEMRMLRWMCGVTRMDRIRNEYVRGSLKVA 161
+G+A+ ER L A+ + R R++++ +E VRG L A
Sbjct: 120 LGRALADAERELAASRRELERERRSRERLEKVCDELVRGGLVAA 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,485,236
Number of Sequences: 37544
Number of extensions: 425759
Number of successful extensions: 1184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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