Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0521
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110506-1|AAI10507.1|  695|Homo sapiens LMBR1 domain containing...    35   0.31 
AL137370-1|CAB70714.1|  205|Homo sapiens hypothetical protein pr...    32   2.2  
BC030146-1|AAH30146.1|  717|Homo sapiens RNA binding motif prote...    30   6.7  
AK025571-1|BAB15173.1|  727|Homo sapiens osaminidase mRNA.  prot...    30   6.7  

>BC110506-1|AAI10507.1|  695|Homo sapiens LMBR1 domain containing 2
           protein.
          Length = 695

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
 Frame = -2

Query: 390 NMFAPSILFYHIPFLRSLPSYPYRLSHNPSIS-S*VY---LFL*ILPHS*LTLS*QPHFH 223
           ++F  SI  Y   F   + +Y Y  SH+ + + S ++   LF  + P   L      H  
Sbjct: 440 SIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCLNFLGLTHMD 499

Query: 222 FVSSHVHTIPNAHSSVSMSQVPLLDFL*HTHSVFYPFSLLHTSIATFASL 73
              SH +T P A++S+ M  + +L F+     ++YP  ++   IAT+ SL
Sbjct: 500 SSISHKNTQPTAYTSI-MGSMKVLSFIADGFYIYYPMLVVILCIATYFSL 548


>AL137370-1|CAB70714.1|  205|Homo sapiens hypothetical protein
           protein.
          Length = 205

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 231 HFHFVSSHVHTIPNAHSSVSMSQVPLLDFL*HTHSVFYPFSLLHTSIATFASL 73
           H     SH +T P A++S+ M  + +L F+     ++YP  ++   IAT+ SL
Sbjct: 7   HMDSSISHKNTQPTAYTSI-MGSMKVLSFIADGFYIYYPMLVVILCIATYFSL 58


>BC030146-1|AAH30146.1|  717|Homo sapiens RNA binding motif protein
           35B protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 470 FAARGVVPTPYVIIIILPFPQSPGVGATCLL---LPYSSII 357
           +A+  ++PT    ++ +PFP +PG G  C+    LPY++ I
Sbjct: 438 YASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATI 478


>AK025571-1|BAB15173.1|  727|Homo sapiens osaminidase mRNA.
           protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 470 FAARGVVPTPYVIIIILPFPQSPGVGATCLL---LPYSSII 357
           +A+  ++PT    ++ +PFP +PG G  C+    LPY++ I
Sbjct: 448 YASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATI 488


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,708,157
Number of Sequences: 237096
Number of extensions: 2396740
Number of successful extensions: 5240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5236
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)