Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0521
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 39 0.003
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 39 0.003
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 39 0.003
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 36 0.021
Z67755-8|CAE17847.1| 209|Caenorhabditis elegans Hypothetical pr... 31 1.0
U64848-1|AAB04881.2| 481|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF003140-5|AAD47120.1| 814|Caenorhabditis elegans Hypothetical ... 29 4.1
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 29 4.1
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 29 4.1
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 28 7.2
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 28 7.2
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +3
Query: 15 SNTYGVGKAMKGVERRLHAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVT*KLRSAR 191
S + KA+ R HA+ R L + + +R + E +R V ++ +
Sbjct: 752 SEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRK 811
Query: 192 LGWYGHVMRRNENEVVKRVLTMNVEGF-RGRGRPKKKWMDCVKDDMGRRGVSEEMV 356
LGW GHV RR + + G+ R GRP +W D ++ ++ R E++
Sbjct: 812 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 867
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +3
Query: 15 SNTYGVGKAMKGVERRLHAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVT*KLRSAR 191
S + KA+ R HA+ R L + + +R + E +R V ++ +
Sbjct: 927 SEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRK 986
Query: 192 LGWYGHVMRRNENEVVKRVLTMNVEGF-RGRGRPKKKWMDCVKDDMGRRGVSEEMV 356
LGW GHV RR + + G+ R GRP +W D ++ ++ R E++
Sbjct: 987 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 1042
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +3
Query: 15 SNTYGVGKAMKGVERRLHAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVT*KLRSAR 191
S + KA+ R HA+ R L + + +R + E +R V ++ +
Sbjct: 666 SEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRK 725
Query: 192 LGWYGHVMRRNENEVVKRVLTMNVEGF-RGRGRPKKKWMDCVKDDMGRRGVSEEMV 356
LGW GHV RR + + G+ R GRP +W D ++ ++ R E++
Sbjct: 726 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 781
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +3
Query: 15 SNTYGVGKAMKGVERRLHAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVT*KLRSAR 191
S + KA+ R HA+ R L + + +R + E +R V ++ +
Sbjct: 278 SEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRK 337
Query: 192 LGWYGHVMRRNENEVVKRVLTMNVEGF-RGRGRPKKKWMDCVKDDMGRRGVSEEMV 356
LGW GHV RR + + G+ R GRP +W D ++ ++ R E++
Sbjct: 338 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 393
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 36.3 bits (80), Expect = 0.021
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Frame = +3
Query: 57 RRLHAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVT*KLRSARLGWYGHVMRRNENE 233
R HAA R L + + +R I E VR K+ ++ +LGW GHV RR +
Sbjct: 77 RVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAGHVARRTDGR 136
Query: 234 VVKRVLT-MNVEGFRGRGRPKKKWMDCVKDDMGRRGVSEEM-------VYDRRVWK 377
+ + R GRP +W D ++ ++ R ++ DR+ WK
Sbjct: 137 WTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWK 192
>Z67755-8|CAE17847.1| 209|Caenorhabditis elegans Hypothetical
protein F54F7.8 protein.
Length = 209
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 207 VHTIPNAHSSVSMSQVPLLDFL*HTHSVFYPFSLLHTSIATFASL 73
V PN H V +SQVP L L H + +P + +I+ + L
Sbjct: 7 VRIAPNGHPYVCLSQVPPLQTLPHLPQISHPLTTPQVAISPLSQL 51
>U64848-1|AAB04881.2| 481|Caenorhabditis elegans Hypothetical
protein C50E3.5 protein.
Length = 481
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 375 KEQTCCADPR*LWEGQDNDDDVWSWNNAP 461
K TC L Q D DVWSWN+AP
Sbjct: 15 KNPTCQDVKAPLVSSQVFDPDVWSWNSAP 43
>AF003140-5|AAD47120.1| 814|Caenorhabditis elegans Hypothetical
protein C44E4.1b protein.
Length = 814
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 246 VLTMNVEGFRGRGR-----PKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEQTCCADP 401
+LT NV+ G R +K + VK +GR+ + + + +R + +TCCADP
Sbjct: 159 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 215
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 246 VLTMNVEGFRGRGR-----PKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEQTCCADP 401
+LT NV+ G R +K + VK +GR+ + + + +R + +TCCADP
Sbjct: 2057 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2113
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 246 VLTMNVEGFRGRGRP---KKKWMDCVKDDMGRRGVSEEMVYDRRVWKEQTCCADP 401
+LT NV+ GR +K + VK +GR+ + + + +R + +TCCADP
Sbjct: 2057 LLTTNVDSSSGRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2111
>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical protein
C26H9A.2 protein.
Length = 1334
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 104 STHPSQHSHLCCMQSPFNSFHR 39
S PSQ +HL C Q F++F R
Sbjct: 1064 SKKPSQTAHLACFQCQFSAFDR 1085
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
C25D7.3 protein.
Length = 2150
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 279 RGRPKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEQ 383
RGRPKK + K RRG EE ++ V +EQ
Sbjct: 1328 RGRPKKVKENLKKRIQPRRGQKEEAAHEPEVVEEQ 1362
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
protein.
Length = 2150
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 279 RGRPKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEQ 383
RGRPKK + K RRG EE ++ V +EQ
Sbjct: 1328 RGRPKKVKENLKKRIQPRRGQKEEAAHEPEVVEEQ 1362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,845,178
Number of Sequences: 27780
Number of extensions: 372099
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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