Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0521
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 fami...    30   1.7  
At5g04610.1 68418.m00462 spermidine synthase-related / putrescin...    28   5.0  
At3g02350.1 68416.m00218 glycosyl transferase family 8 protein c...    28   5.0  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    28   5.0  
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami...    27   8.8  
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro...    27   8.8  
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro...    27   8.8  
At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase ...    27   8.8  

>At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 family
           protein other predicted proteins Arabidopsis thaliana
          Length = 120

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 138 HTHSVFYPFSLLHTSIATFASLLHAIAFQLLSSPF 34
           H H +FY  SLLH  + ++ + L  +   +L+ PF
Sbjct: 84  HGHDIFYSNSLLHPKMNSYWAKLPVVKAAMLAHPF 118


>At5g04610.1 68418.m00462 spermidine synthase-related / putrescine
           aminopropyltransferase-related contains weak similarity
           to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
           aminopropyltransferase 2) (SPDSY 2) (Swiss-Prot:O48659)
           [Hyoscyamus niger]
          Length = 434

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 585 LALLPRMIMKIVIIFIPHL*W*INAVTSVTLSVCLVPYV 469
           +ALLP+ + +  I  +P L +  N V+SV +  C+ P+V
Sbjct: 123 VALLPKTLTREEIDDVPFLIYDDNVVSSVEIEKCVGPFV 161


>At3g02350.1 68416.m00218 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 561

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +3

Query: 354 VYDRRVWKEQTCCADPR*LWEGQDNDDDVWSWNNAPSGKHTVLSTQRVL 500
           ++D   W+ + C  D    W+  + D  +W     P G  T  S  + L
Sbjct: 449 IFDLNAWRREKC-TDQYHYWQNLNEDRTLWKLGTLPPGLITFYSKTKSL 496


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 235 TSFSFRLITCPYH-PKRALLSFYVTGATFRLPLTYSFRILSILVTPHIHRN 86
           T+   +L T P+H P+    +  +   +  LPL Y+  +L    T H+H N
Sbjct: 188 TTHLLQLYTTPHHHPRSTTNTNLLLLRSITLPLRYTILLLLQYTTTHLHTN 238


>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 432

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 138 HTHSVFYPFSLLHTSIATFASLLHAIAFQLLSSP 37
           H H +FY  SLLH  + ++ + L  +   +L+ P
Sbjct: 142 HGHDIFYSNSLLHPKMNSYWAKLPVVKAAMLAHP 175


>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 339 VSEEMVYDRRVWKEQTCCADPR*LWEGQDNDD-DVWSWNNAPS 464
           V+E   +++RVW      ADP  L  G D+    +WS N   S
Sbjct: 569 VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 611


>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 339 VSEEMVYDRRVWKEQTCCADPR*LWEGQDNDD-DVWSWNNAPS 464
           V+E   +++RVW      ADP  L  G D+    +WS N   S
Sbjct: 569 VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 611


>At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase
           identical to phosphoenolpyruvate carboxylase kinase
           [Arabidopsis thaliana] gi|6318613|gb|AAF06968; contains
           protein kinase domain, Pfam:PF00069
          Length = 284

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -1

Query: 280 LPLNPSTFIVNTLLTTSFSFRLITCPYHPKRALLSFYVTGATFRLPLTYSFRILSILVTP 101
           L  +P+   ++ L+ T  +  +     HP  ++    V+  TF  P T SF    +    
Sbjct: 70  LSYHPNIVQIHDLIDTDSTLSIFMELVHPSVSIYDRLVSSGTFFEPQTASFAKQILQALS 129

Query: 100 HIHR 89
           H HR
Sbjct: 130 HCHR 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,664
Number of Sequences: 28952
Number of extensions: 343514
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)