Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0520
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1223 + 24985730-24985916,24986008-24986039,24986790-249868...    40   0.002

>07_03_1223 +
           24985730-24985916,24986008-24986039,24986790-24986879,
           24987441-24987535,24987635-24987839,24988011-24988080,
           24988564-24988642,24988859-24988926,24989114-24989202,
           24989284-24989354,24989493-24989578,24989674-24989750
          Length = 382

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
 Frame = +1

Query: 316 PVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKAIP--------ISSLLYKSFTTL 471
           P A   E++RA +KDD Y   + ++         G++           +   LY   TT 
Sbjct: 29  PEAAQPEIMRAAEKDDGYAAHVTEACRDAFRHLFGTRVAVAYQNEIKLLGQSLYYLLTTG 88

Query: 472 KDLQTLGEEYSGIVQVDDSYHKLPSYYARLASVLLSTFGENLTRRFVNHV 621
              QTLGEEY  I QV  S+   P+   R+  +L  T    L  R  + +
Sbjct: 89  SGQQTLGEEYCDISQVATSHGLPPTPARRILFILYQTTVPYLAERISSRI 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,036
Number of Sequences: 37544
Number of extensions: 265644
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)