Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0520
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      28   6.0  
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       28   6.0  

>SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 341 YVHGKKTINTKNNWPIPYLNCYHYSTVQKL 430
           Y HG+K I + + W +PY +C  YS  Q L
Sbjct: 93  YSHGQKPITSPSEWTVPY-HCSLYSNTQYL 121


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 310  ALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKAIPISSLLYKSFTTLKDLQTL 489
            A P A   +VL +  K   Y  +      K  P QH +K++P SS+   + +    LQT+
Sbjct: 914  ANPTATKPKVLTSASKPTSYATKTVPPPPK--PTQHPTKSVPASSVRSNTGSPAAALQTV 971

Query: 490  GEEYSGIVQ 516
                  +++
Sbjct: 972  SASIDDVIK 980


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 454  KSFTTLKDLQTLGEEYSGIVQVDDSYHKLPSYYARLASVLLS 579
            + F TL+DL    E YS    V D +H    + A+   +LLS
Sbjct: 1081 QGFITLRDLFRWAERYSKTPDVGDGFHDWEHHLAQDGYMLLS 1122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,513,483
Number of Sequences: 59808
Number of extensions: 347005
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)