Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0520
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    41   7e-04
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    29   2.3  
AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical...    29   3.0  

>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
 Frame = +1

Query: 319 VAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKA----IP----ISSLLYKSFTTLK 474
           VA+  E++R+ ++D++Y + + + +S++     G +      P    I+S LY + T + 
Sbjct: 5   VAEIGEIVRSQRRDEEYIEDITERLSRVSKELLGQRTWIRWFPYLKSIASTLYYTSTVVL 64

Query: 475 DLQTLGEEYSGIVQVDDSYHKLPSYYARLASVLL 576
             QTLGEEY  + + +     +PS  +R++ VLL
Sbjct: 65  GNQTLGEEYVHLFESNGLERTVPSIPSRISFVLL 98


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
 Frame = +1

Query: 328  PAEVLRAWQKDDQYEKQLADSISKLLPLQH-GSKAIP------ISSLLYKSFTTLKDLQT 486
            P E+ R W+KD++  + +    ++ +P  H G+   P      +   L++ F  + D+  
Sbjct: 1071 PDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAIDDVLK 1130

Query: 487  LGEEYSGIVQVD-DSYHKLPSYYARLASVL--LSTFGENLTRRFVNHVGKKIE 636
            + EE    V++  D   K+  Y   +AS    L+ +   L R  + + G K E
Sbjct: 1131 ISEERDEQVEISIDETIKIDGYTEYMASAKNDLARYNAQL-RSMMENYGIKTE 1182


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
 Frame = +1

Query: 328  PAEVLRAWQKDDQYEKQLADSISKLLPLQH-GSKAIP------ISSLLYKSFTTLKDLQT 486
            P E+ R W+KD++  + +    ++ +P  H G+   P      +   L++ F  + D+  
Sbjct: 1071 PDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAIDDVLK 1130

Query: 487  LGEEYSGIVQVD-DSYHKLPSYYARLASVL--LSTFGENLTRRFVNHVGKKIE 636
            + EE    V++  D   K+  Y   +AS    L+ +   L R  + + G K E
Sbjct: 1131 ISEERDEQVEISIDETIKIDGYTEYMASAKNDLARYNAQL-RSMMENYGIKTE 1182


>AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.9 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 335 KFYVHGKKTINTKN--NWPIPYLNCYHYSTVQKLFQYPLCFINHLQP 469
           K+YV  K  I+     NWP+P++      ++Q +F+     + +L+P
Sbjct: 276 KYYVTPKLKIDISKVTNWPVPFMGGIFRRSIQNMFEQTGVPLAYLEP 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,366
Number of Sequences: 27780
Number of extensions: 279149
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)