Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0517
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   208   5e-55
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    54   2e-08
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    48   1e-06
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    36   0.008
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.6  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   3.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   4.6  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    26   6.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   8.1  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  208 bits (509), Expect = 5e-55
 Identities = 93/173 (53%), Positives = 131/173 (75%)
 Frame = +1

Query: 190 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 369
           D +NR +K G ++RVVG+LLG      V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M 
Sbjct: 29  DSYNRSAK-GTKRRVVGILLG-QNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMN 86

Query: 370 GMFKKVNAXEKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 549
            MFKK+NA EK+VGWYHTGP+L  +D+ IN L+++Y PN VLVIID KPK +GLPT AY 
Sbjct: 87  EMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYF 146

Query: 550 AVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHVLRDIKDTTVGSLSQRIT 708
           A++E+ DDG+ +SRTF H+PS I           H+LRD +D +VG+L+ R+T
Sbjct: 147 AIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVT 199


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +1

Query: 190 DHFNRMSKIGNQKRVVGVLLGCWRAKG-VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENM 366
           DH  R S+  N +RV+G LLG     G  +++ + FAVP +E  +   V   + +Y   M
Sbjct: 35  DHSTRKSE--NNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEV---EMEYHRAM 89

Query: 367 YGMFKKVNAXEKVVGWYHTGPKLHQNDIAINEL 465
           Y +  K N  E VVGWY T P L      I  L
Sbjct: 90  YHLHLKANPREVVVGWYATSPDLDAFSALIQNL 122


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +1

Query: 202 RMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFK 381
           R  + G    V+G++LG +     + V + FA+P  +     SV  +D  + +NM  M K
Sbjct: 42  RHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMP--QSGTGVSVEAVDPVFQKNMMDMLK 99

Query: 382 KVNAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 507
           +    E VVGWYH+ P     L   DI   +   +  P +V V++D
Sbjct: 100 QTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVD 145


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
 Frame = +1

Query: 217 GNQKRVVGVLLGCWRAKGV-LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNA 393
           G    V+G + G  + +G  L + +SFA+P +  +   +      +Y    + + K V  
Sbjct: 52  GMPLEVMGYVQG--KVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYR 109

Query: 394 XEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAK 513
            E V+GWYH+ P     L   D+      ++Y    V V++D K
Sbjct: 110 HENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPK 153


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 NRESETSSRCSIGLLESQGCLRRIEQLRSPV 305
           NRE E SS   +G  +  GC R++ Q+R  V
Sbjct: 210 NREDEESSLAEVGYDDIGGCRRQMAQIRELV 240


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 425 PVWYQPTTFSXALTFLNIPYMFSK*SWSRNQTDLSLSSSS--NGTAKLFDTSKTPLALQQ 252
           PV     T S ++ + + P + S  S S + T +S +S++   GT+    TS T + L  
Sbjct: 585 PVTTTNCTTSTSVLYTSTP-ITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTS 643

Query: 251 PNRTPTT 231
            NRT TT
Sbjct: 644 TNRTSTT 650


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 337 TRQICLCRLHQTGLRSCSIRLRHPWLSNNPIEHRLLVSD 221
           T++  +      G+R C +++ HPWL +   E + +  D
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQSYTFEDKYVGRD 791


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 344 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 240
           S  Q+ LSL +SSNGT  +  T   P+ L +PN T
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVEL-KPNIT 215


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 280 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKVVGWYHTGP 429
           V +S +  F  DD +     L  + +E ++ +FK+ NA  +++GW ++ P
Sbjct: 794 VISSLSAIFIRDDTEND---LVTELVEKLF-LFKQYNACMQLIGWLNSDP 839


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 56 YFILQSYYSLNYTKL 12
          YF+ Q +YS NYTKL
Sbjct: 13 YFVRQYFYSGNYTKL 27


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 314 TTKTNLSGSLTMIT 355
           TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 481 PNSVLVIIDAKPKDLGLPT-EAYQAVEEVHDD 573
           P+  L + D+KP+ LG+ T + Y    +V DD
Sbjct: 567 PDHTLRVKDSKPESLGIDTVKQYTGYLDVEDD 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,394
Number of Sequences: 5004
Number of extensions: 53168
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)