Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0517
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)              215   2e-56
SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)                       40   0.002
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             31   1.2  
SB_22225| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       28   8.6  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score =  215 bits (526), Expect = 2e-56
 Identities = 112/174 (64%), Positives = 128/174 (73%)
 Frame = +1

Query: 190 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 369
           DHFNRM K+G+QKRVVGVLLG  R KGVLDV+N FAVPFDEDD+D++VWFLDHDYLENMY
Sbjct: 23  DHFNRMGKVGSQKRVVGVLLGS-RRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMY 81

Query: 370 GMFKKVNAXEKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 549
            MFKKVN     + +      LH  DIA  +         VLVIIDAKPKDL LPT+AY 
Sbjct: 82  AMFKKVNVGFVDMSFI----VLHPYDIACVQ---------VLVIIDAKPKDLRLPTDAYV 128

Query: 550 AVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHVLRDIKDTTVGSLSQRITN 711
           AVEEVHDDGTPT++TFEH+PSEI           H+LRDIK+ T G+LSQRITN
Sbjct: 129 AVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLRDIKNLTAGTLSQRITN 182


>SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)
          Length = 195

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
 Frame = +1

Query: 208 SKIGNQKRVVGVLLGCWRAKG-VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKK 384
           ++ G    V+G++LG  +  G  + V ++FA+P +  +   +     ++Y+       K 
Sbjct: 66  ARSGGNLEVMGLMLG--KVDGDTMIVMDAFALPVEGTETRVNAQAAAYEYMAAYIESAKS 123

Query: 385 VNAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQA 552
           V   E  +GWYH+ P     L   D+   +++ +      + I+  KP D G P+E YQ 
Sbjct: 124 VGRLENAIGWYHSHPGYGCWLSGIDVG-TQMVNQQFQEPFVAIVGYKPPDEG-PSE-YQT 180

Query: 553 V 555
           +
Sbjct: 181 I 181


>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/86 (22%), Positives = 41/86 (47%)
 Frame = +1

Query: 235 VGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKVVGW 414
           VG +     AK ++D  +   VP +   +   + F  ++ ++  +  ++K +A     GW
Sbjct: 174 VGTMAPNVEAK-IIDSEHGNVVPINTPGE---ICFRGYNVMQGYWDDYEKTDAAIDSNGW 229

Query: 415 YHTGPKLHQNDIAINELIRRYCPNSV 492
           +H+G  LH  + +  E I+ +C   +
Sbjct: 230 FHSG--LHPGESSSPEEIKEFCKGQI 253


>SB_22225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 HHESNHQSGGSSVSVAQCRGPF*PHE*NRESETSSRCSI 248
           HH+  ++ G   V++   RGP   H+   E  T+SR ++
Sbjct: 28  HHDWTYEGGHDIVTIGPTRGPRHHHDWTYEGSTTSRLNL 66


>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 316 RLHQTGLRSCSIRLRHPWLSNNPIEHRLLVSDSR 215
           R HQT +R  S  +RH   S++ I H    SDSR
Sbjct: 57  RHHQTFIRHSSDIIRHHQTSSDIIRHHQTSSDSR 90


>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 190 DHFNRM-SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLD-HDYLEN 363
           D FN   S+I + K V+G+ L C     V + S+S+   F   D D   +F D   Y + 
Sbjct: 236 DLFNLQGSEIIHVKHVIGMYLACTFEVAVYNRSDSWCSVFRPSDLDVLEYFYDLKHYWKR 295

Query: 364 MYG 372
            YG
Sbjct: 296 GYG 298


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 193 HFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPF----DEDDKDKSVWFLDHDYLE 360
           HF+R+ + G   + V V+L  W    V  +SNS +  F    +E  ++  + + +  Y+E
Sbjct: 466 HFHRLIQAGMIPQEVHVVLHLWNTSWVSTLSNSSSADFVSLSNEIQREIYILYKNSSYIE 525

Query: 361 NM 366
            +
Sbjct: 526 EL 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,933,355
Number of Sequences: 59808
Number of extensions: 398599
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)