Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0517
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   264   3e-71
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    48   5e-06
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    40   0.002
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    36   0.029
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  264 bits (648), Expect = 3e-71
 Identities = 121/174 (69%), Positives = 140/174 (80%)
 Frame = +1

Query: 190 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 369
           DHFNR+SK  + KRVVGVLLG  +    LD+ NSFAVPFDEDDKDKS WFLD DYLE+MY
Sbjct: 53  DHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMY 112

Query: 370 GMFKKVNAXEKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 549
           GMF KV A EK+VGWYHTGPKLH+NDIAINE ++R+CPN VLVIIDA+PK++GLPTEAY 
Sbjct: 113 GMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKNIGLPTEAYI 172

Query: 550 AVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHVLRDIKDTTVGSLSQRITN 711
            V+EVHDDGTP  +TFEHVPS+I           H+LRDIKD T G+LSQRIT+
Sbjct: 173 EVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQRITD 226


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +1

Query: 208 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 387
           +K   Q++ +G L+G +  KG + V+N FA+PF+E + D  +   D  + + M    KK 
Sbjct: 29  AKNTGQEKCMGTLMGYYE-KGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKT 84

Query: 388 NAXEKVVGWYHT 423
           +  E+ VGW+ T
Sbjct: 85  SPNEQPVGWFLT 96


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
 Frame = +1

Query: 202 RMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFK 381
           R ++ G    V+G++LG +     ++V++ FA+P  +     +V  +D  Y      + K
Sbjct: 41  RHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMP--QSGTSVTVESVDPVYQTKHMDLLK 98

Query: 382 KVNAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAKPKDLG-LPTEAY 546
            V   E VVGWYH+ P     L   D+   +      P +V V++D      G +  +A+
Sbjct: 99  LVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAF 158

Query: 547 QAVEEVHDDGTPTSRTFE 600
           ++V  ++    P + T E
Sbjct: 159 RSVNPLNLQIRPLAPTAE 176


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
 Frame = +1

Query: 211 KIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 390
           + G    V+G++LG +     ++V + FA+P  +     SV  +D  +   M  M K+  
Sbjct: 48  RAGVPMEVMGLMLGEFVDDYTVNVIDVFAMP--QSGTGVSVEAVDPVFQAKMLDMLKQTG 105

Query: 391 AXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 507
             E VVGWYH+ P     L   DI   +        +V V++D
Sbjct: 106 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVD 148


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
 Frame = +1

Query: 208 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 387
           +K G    ++G+L G   A   + + + FA+P +  +   +     ++Y+     M    
Sbjct: 70  AKRGGNLEIMGLLQGRIDANSFI-ILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTE 128

Query: 388 NAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 507
              EKVVGWYH+ P     L   D++   L +++    V ++ID
Sbjct: 129 GRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVID 172


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 350 SWSRNQTDLSLSSSSNGTAKLFDTSKTP 267
           +WS  +T L  S S++G+ KL+DT   P
Sbjct: 282 AWSPTETGLLASCSADGSIKLWDTRSAP 309


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 344  SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPTTR 228
            SR+ +    SS   G+ +L D      AL +PNRTP  R
Sbjct: 3092 SRHVSSAEESSEERGSVELHDVGHHS-ALHEPNRTPNRR 3129


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 344  SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPTTR 228
            SR+ +    SS   G+ +L D      AL +PNRTP  R
Sbjct: 3101 SRHVSSAEESSEERGSVELHDVGHHS-ALHEPNRTPNRR 3138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,949,481
Number of Sequences: 27780
Number of extensions: 298825
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)