Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0517
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.31 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.31 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.53 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 316 DKDKSVWF-LDHDY-LENMYGMFKKVNAXEKVVGWYHTGPKLHQNDI 450
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 316 DKDKSVWF-LDHDY-LENMYGMFKKVNAXEKVVGWYHTGPKLHQNDI 450
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 403 VVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTP 582
           ++ W   GP+ H+    I ++  +Y P    +++  +PK   L     + + E+ +   P
Sbjct: 317 IINWNFRGPRTHRMPQLIRKIFLKYLPT---ILMMRRPKKTRL-----RWMMEIPNVTLP 368

Query: 583 TSRTFEHVPSEI 618
           TS T+   P+E+
Sbjct: 369 TS-TYSGSPTEL 379


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 328 SVWFLDHDY-LENMYGMF 378
           S W+L+HDY LEN    F
Sbjct: 206 SGWYLNHDYNLENKLNYF 223


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
 Frame = +1

Query: 328 SVWFLDHDY-LEN 363
           S W+L+HDY LEN
Sbjct: 206 SGWYLNHDYNLEN 218


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 88 FYYIFGICCCSILYYKVIIH 29
          F ++F +C   IL   V+IH
Sbjct: 15 FNFVFAVCGLGILTLGVLIH 34


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 80  YIRDLLLFYFILQSYYSLNYT 18
           +  DLL +  +L+ +YS+N T
Sbjct: 228 FTTDLLSYNILLRRHYSMNST 248


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 523 LGLPTEAYQAVEEVHD 570
           LGL TE YQAV+E+HD
Sbjct: 330 LGL-TE-YQAVKEMHD 343


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 472 RYCPNSVLVIIDAKPKDL 525
           ++C N+ +V  D KPK++
Sbjct: 169 QFCHNAGIVHADVKPKNI 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,250
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)