Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0517
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 207 5e-54
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 207 6e-54
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 69 3e-12
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 48 5e-06
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 48 5e-06
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 45 6e-05
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 40 0.002
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun... 34 0.081
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun... 34 0.081
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 31 0.57
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa... 31 0.75
At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase famil... 30 1.7
At4g02050.1 68417.m00275 sugar transporter, putative similar to ... 28 7.0
At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi... 28 7.0
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 27 9.3
At1g28140.1 68414.m03452 expressed protein contains similarity t... 27 9.3
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 207 bits (506), Expect = 5e-54
Identities = 95/174 (54%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Frame = +1
Query: 190 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 369
DH+NR++K KRVVGVLLG ++G +DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+
Sbjct: 29 DHYNRVAK-DTSKRVVGVLLGS-SSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMF 86
Query: 370 GMFKKVNAXEKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 549
MFK++NA E +VGWY TGPKL +ND+ ++ L Y PN VLVIID +PK+LG+PT+AY
Sbjct: 87 HMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 550 AVEEVHDDGTPTS-RTFEHVPSEIXXXXXXXXXXXHVLRDIKDTTVGSLSQRIT 708
AVEEV ++ T S + F HVP+EI H+LRD+KDTT+ +L+ +T
Sbjct: 147 AVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVT 200
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 207 bits (505), Expect = 6e-54
Identities = 96/174 (55%), Positives = 130/174 (74%), Gaps = 1/174 (0%)
Frame = +1
Query: 190 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 369
DH+NR++K + KRVVGVLLG ++GV+DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+
Sbjct: 29 DHYNRVAK-DSSKRVVGVLLGS-SSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMF 86
Query: 370 GMFKKVNAXEKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 549
MFK++NA E VVGWY TGPKL +ND+ ++ L Y PN VLVIID +PK+LG+PT+AY
Sbjct: 87 HMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 550 AVEEVHDDGTPTS-RTFEHVPSEIXXXXXXXXXXXHVLRDIKDTTVGSLSQRIT 708
AVEEV ++ T S + F HV +EI H+LRD+KDTT+ +L+ +T
Sbjct: 147 AVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVT 200
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/94 (37%), Positives = 51/94 (54%)
Frame = +1
Query: 226 KRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKV 405
+RV+G LLG G +D+ NS+AVP +E +V D DY NM KVN+ E +
Sbjct: 50 ERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETI 106
Query: 406 VGWYHTGPKLHQNDIAINELIRRYCPNSVLVIID 507
VGWY TG ++ I++ R PN + + +D
Sbjct: 107 VGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVD 140
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 48.4 bits (110), Expect = 5e-06
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Frame = +1
Query: 229 RVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKVV 408
RV G ++G R + V ++ NSF + +D S LD +LE ++KKV ++
Sbjct: 57 RVYGCVIGVQRGRTV-EIFNSFELLYDP-----STQTLDRSFLEKKQELYKKVFPDFYIL 110
Query: 409 GWYHTGPKLHQNDIAINELIRRYCPNSVLVIID--AKPKDLGLPTEAYQAVEEVH-DDGT 579
GWY TG ++D+ I++ + + V V+++ LP Y++ E+H DG
Sbjct: 111 GWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYES--ELHVIDGI 168
Query: 580 P------TSRTFEHVPSE 615
P TS T E V +E
Sbjct: 169 PQLIFAHTSYTIETVEAE 186
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 48.4 bits (110), Expect = 5e-06
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Frame = +1
Query: 229 RVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKVV 408
RV G ++G R + V ++ NSF + FD ++ LD +LE ++KKV V+
Sbjct: 57 RVYGCVIGLQRGRTV-EIFNSFELIFDP-----ALDTLDRSFLEKKQELYKKVFPDFYVL 110
Query: 409 GWYHTGPKLHQNDIAINELIRRYCPNSVLVIID--AKPKDLGLPTEAYQAVEEVHDDGTP 582
GWY TG ++D+ I++ + + V V+++ LP Y++ V DG P
Sbjct: 111 GWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHV-IDGIP 169
Query: 583 TSRTFEHVPSEIXXXXXXXXXXXHVLRDIKDTTVGSLSQRI 705
S F H I HV +K + GS + ++
Sbjct: 170 QS-IFVHTSYTIETVEAERISVDHVAH-LKPSDGGSAATQL 208
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 211 KIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 390
+ G V+G++LG + + + V + FA+P + SV +DH + NM M K+
Sbjct: 45 RAGVPMEVMGLMLGEFVDEYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTG 102
Query: 391 AXEKVVGWYHTGP 429
E VVGWYH+ P
Sbjct: 103 RPEMVVGWYHSHP 115
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +1
Query: 232 VVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKVVG 411
V G LLG VL+V+N F PF D D+ + +Y M ++VN VG
Sbjct: 47 VTGQLLGL-DVGSVLEVTNCF--PFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVG 103
Query: 412 WYHTGPKLHQNDIAINELIRRYCPN---SVLVIIDAKPKDLGL 531
WY + + + E Y N V +I D DLG+
Sbjct: 104 WYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGV 146
>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 351
Score = 34.3 bits (75), Expect = 0.081
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 208 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 387
++ G ++G++ G ++ V ++FA+P + + + ++Y+ K
Sbjct: 73 ARSGGTIEIMGLMQGKTEGDTII-VMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLA 131
Query: 388 NAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 507
E VVGWYH+ P L D++ L ++Y + V+ID
Sbjct: 132 GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175
>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 357
Score = 34.3 bits (75), Expect = 0.081
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 208 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 387
++ G ++G++ G ++ V ++FA+P + + + ++Y+ K
Sbjct: 73 ARSGGTIEIMGLMQGKTEGDTII-VMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLA 131
Query: 388 NAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 507
E VVGWYH+ P L D++ L ++Y + V+ID
Sbjct: 132 GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
5A (CSN5A) / c-JUN coactivator protein AJH2, putative
(AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 31.5 bits (68), Expect = 0.57
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 208 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 387
++ G ++G++ G ++ V ++FA+P + + + ++Y+ K
Sbjct: 73 ARSGGTIEIMGLMQGKTDGDTII-VMDAFALPVEGTETRVNAQDDAYEYMVEYSQTNKLA 131
Query: 388 NAXEKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 507
E VVGWYH+ P L D++ L +++ + V+ID
Sbjct: 132 GRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVID 175
>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 717
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 418 HTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEV 564
H+ L ++ +NEL R NS+L + KP+ L PT A++A E++
Sbjct: 646 HSDDSLRSLEVELNELSRIKPRNSILNRTEDKPEQL-TPTSAWRAAEKL 693
>At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
similar to GI:1617270 (MF7P) and gi:1617628 (MF45P) from
[Brassica napus] ; contains Pfam AMP-binding enzyme
domain PF00501
Length = 660
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 370 GMFKKVNAXEKVV--GWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEA 543
G +K E+V+ GW+HTG I E++ PN VL IID K + L
Sbjct: 478 GYYKNPELTEEVMKDGWFHTGD--------IGEIL----PNGVLKIIDRKKNLIKLSQGE 525
Query: 544 YQAVEEVHD 570
Y A+E + +
Sbjct: 526 YVALEHLEN 534
>At4g02050.1 68417.m00275 sugar transporter, putative similar to
SP|Q10710 Sugar carrier protein A {Ricinus communis},
glucose transporter [Saccharum hybrid cultivar H65-7052]
GI:347855; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 513
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 639 FFSLLCTNFTWNMFKGPRSWCTIIVYFLYCLVSFSR*TKIFRFSINNYKH*IW 481
F LLC F + +F W T++ F+Y L+ ++ I ++ KH W
Sbjct: 443 FLGLLCA-FKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFW 494
>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 415
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 684 HSGILDIS*HMLYSHFFSLLCTNFTWNMFKGPRSW--CTIIVYFLYCLVS 541
H GI+ +L S SLL TW+ F+ PR W C + +Y + VS
Sbjct: 360 HVGIVIAFVFLLLSLMGSLLV--ITWSRFRVPRFWGICLVGLYVAFTFVS 407
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 271 VLDV-SNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAXEKVVGWYHTGPKLHQ 441
VLD S + + D D DK +Y+E+MY +K+V K + HT P++ +
Sbjct: 131 VLDARSKAASKTLDIDYVDKENDLAAVEYVEDMYIFYKEVVNESKPQMYMHTQPEIDE 188
>At1g28140.1 68414.m03452 expressed protein contains similarity to
cytochrome oxidase I GI:1289267 from (Xantholinus sp.)
Length = 280
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 241 VLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVW 336
VLLG W A ++ F P +D DKSV+
Sbjct: 226 VLLGTWMALFLVFAGRKFTQPIKDDIGDKSVF 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,436
Number of Sequences: 28952
Number of extensions: 271952
Number of successful extensions: 675
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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