Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0516
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.25 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    29   0.76 
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   4.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   7.1  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.4  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 361 KINIDLGGYEIYYYYVNFIIHIYFSKYTI 275
           K+  +L   EI+Y   N ++H+ FSKY +
Sbjct: 809 KLTFELAFLEIFYELFNCLLHLQFSKYLV 837


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 496 MNYLNRTCQKMVYKDLYTYILYAL 567
           +N++N TC  ++YK  Y YI + L
Sbjct: 72  LNHINLTCMLLLYKSKYEYITWDL 95


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 487 YFQMNYLNRTCQKMVYKDLYT 549
           Y+ M Y   TC KM YK  Y+
Sbjct: 213 YYYMGYYIHTCPKMKYKATYS 233


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 454  IHNILRSTNRHYFQMNYLNRTCQKMVYKDLYTYILYALEAIEI*NVLLDK 603
            IH ++   +  Y  +N + +    M+Y    TY+ ++   + I  VL  K
Sbjct: 1158 IHLLISRNHDPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHISTVLYQK 1207


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 501 IHLKIMSVS*PEYIMYL*IQKNSRRISMRIFLHST*CLDLEKWHLFIKLIL 349
           +HL  +S+  P  ++YL I   +  +SM     ST C  +    LF+   L
Sbjct: 20  MHLSPVSILSPVLLIYLVIHSQNELVSMSWLFRSTICFGVS---LFLSFFL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,278
Number of Sequences: 5004
Number of extensions: 45390
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)