Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0516
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0667 + 12765759-12765787,12766644-12766732,12766967-127670...    32   0.34 
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837...    29   4.2  
07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088,378...    28   7.4  
10_01_0120 - 1480288-1481160                                           27   9.7  
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026...    27   9.7  

>02_02_0667 +
           12765759-12765787,12766644-12766732,12766967-12767065,
           12769131-12769304,12769376-12769590,12769746-12769835,
           12770744-12770905
          Length = 285

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 22  YTEQLKQLFNTCNKNMKALKGFSSSHYF*FFVA*SFYLDC 141
           YTE L  L   CN N  +L G+    +   + A +FY+DC
Sbjct: 63  YTEPLVILGTVCNLNFSSLLGYREKFFLKIYAA-AFYVDC 101


>05_06_0183 -
           26182481-26182897,26183005-26183163,26183261-26183714,
           26184370-26184485
          Length = 381

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 475 TNRHYFQMNYLNRTCQKMVYKDLYTYILYALEAIEI 582
           T +H  ++NYL   C+    KDL  Y   AL+ +E+
Sbjct: 92  TLKHCKELNYLRIPCKLQQLKDLEVYECKALQMMEV 127


>07_01_0508 +
           3786655-3787158,3787542-3787904,3788003-3788088,
           3788164-3788217,3788838-3789020,3789716-3789737
          Length = 403

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 218 IFKSVLKYIILK*VSFIILNGVF*KIYMYYEINVIIIYF---IPAEVNINFINKCHFSRS 388
           +F S   Y+++  +SF+I N     I+ Y ++ V++  F   I   V I+ I K H + S
Sbjct: 244 VFLSCFSYLVMYHISFLIPNKKAAHIFWYVKVTVLLSLFHAGILIWVVIHKILKKHSNIS 303

Query: 389 KH 394
            H
Sbjct: 304 MH 305


>10_01_0120 - 1480288-1481160
          Length = 290

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 279 PFNIIKLTYFSIIYFSTDLNISIYKTFLVL 190
           PF++ KL  F I+Y ST  +  IY   +VL
Sbjct: 260 PFSVNKLKSFFIVYHSTKCDYHIYIYVIVL 289


>05_06_0185 -
           26201013-26201429,26201537-26201695,26201774-26202601,
           26203483-26203605
          Length = 508

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 475 TNRHYFQMNYLNRTCQKMVYKDLYTYILYALEAIEI 582
           T ++  ++NYL   CQ    KDL  Y   AL+ +E+
Sbjct: 219 TLKYCKELNYLRIPCQLQQLKDLEVYERKALQMMEV 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,201,258
Number of Sequences: 37544
Number of extensions: 215386
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)