Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0516
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    30   1.5  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    30   1.5  
At1g77480.2 68414.m09023 nucellin protein, putative similar to n...    28   6.1  
At1g77480.1 68414.m09022 nucellin protein, putative similar to n...    28   6.1  

>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3

Query: 381 EKWHLFIKLILTSAG 337
           E WHLFI++ILT+AG
Sbjct: 749 EDWHLFIEMILTAAG 763


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3

Query: 381 EKWHLFIKLILTSAG 337
           E WHLFI++ILT+AG
Sbjct: 749 EDWHLFIEMILTAAG 763


>At1g77480.2 68414.m09023 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 432

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 466 VYYVFINTKKLKTNLYANFPSFNVMLGSRKMALIYKINIDLGGYEIYYYYV 314
           V+YVFI   + +T+      S  V L +R+++      +    Y + YYYV
Sbjct: 19  VFYVFILCARFQTSEATKDSSAQVKLQNRRLSSTVVFPVSGNVYPLGYYYV 69


>At1g77480.1 68414.m09022 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 466

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 466 VYYVFINTKKLKTNLYANFPSFNVMLGSRKMALIYKINIDLGGYEIYYYYV 314
           V+YVFI   + +T+      S  V L +R+++      +    Y + YYYV
Sbjct: 19  VFYVFILCARFQTSEATKDSSAQVKLQNRRLSSTVVFPVSGNVYPLGYYYV 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,645,888
Number of Sequences: 28952
Number of extensions: 203637
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)