Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0515
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   2.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   4.8  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   6.3  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   8.4  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.4  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 354 YVNGNGSAYHKGDRYT----AAPNEIFVNRS--LHLENVKFYGFDMDYTLAEYKSPQYET 515
           +V GN  A +  D        APN  ++ RS  +++  ++  G    Y+  +YK  +YE 
Sbjct: 89  FVGGNHEASNYLDELPYGGWVAPNIYYMGRSSVINVGGLRIAGISGIYSAMDYKKGRYEG 148

Query: 516 LGFN 527
           L +N
Sbjct: 149 LPYN 152


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 306 MKDHKMENGTSVHFEDYVNGNGSAYHKGDRYTAAPN 413
           + +H +   TS H    VNG  S  HK   Y    N
Sbjct: 154 INNHILHKNTSSHPSSPVNGKSSDIHKSQSYQHLKN 189


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 325 KTGPVCISKIM*TGMDQLTTKATDTQRRLTKFSL 426
           K  P  +  I     + +T KA DT++ +TKFS+
Sbjct: 279 KVQPENLLTIARLAWNNVTAKANDTRKSITKFSV 312


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 3   AGIGTRVVFYRVSPYANCCVLYSVFCDVRK*IFTGFIY 116
           A + T  +  +  PY++  VLY+++ D +  +  GF+Y
Sbjct: 422 AFVRTIQIIRKTGPYSHPDVLYNLYSDTQHLMRWGFMY 459


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 571 ISLGYPLTTNLSLVKLNPNVSYCG 500
           IS   PL   L   +LNP   YCG
Sbjct: 423 ISYSLPLVCRLLFNRLNPGKFYCG 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,056
Number of Sequences: 5004
Number of extensions: 53600
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)